Factsheet for PGSC0003DMT400030603

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011710.2.1	Tomato	cytosol	94.82	87.98
PGSC0003DMT400049226	Potato	cytosol	48.19	47.69
PGSC0003DMT400078008	Potato	cytosol	36.79	46.1
PGSC0003DMT400030386	Potato	cytosol	36.79	45.22
PGSC0003DMT400078201	Potato	cytosol	35.75	44.81
PGSC0003DMT400030387	Potato	cytosol	35.23	44.16
PGSC0003DMT400007587	Potato	cytosol	35.23	43.87
GSMUA_Achr6P33860_001	Banana	cytosol	37.31	43.64
PGSC0003DMT400038705	Potato	cytosol	30.05	43.61
PGSC0003DMT400078006	Potato	cytosol	34.72	43.51
PGSC0003DMT400078202	Potato	cytosol	34.2	42.86
PGSC0003DMT400089913	Potato	cytosol	33.68	42.48
PGSC0003DMT400078007	Potato	cytosol	33.68	42.21
VIT_13s0019g03170.t01	Wine grape	cytosol	34.72	42.14
GSMUA_Achr9P03540_001	Banana	cytosol	34.72	41.88
PGSC0003DMT400030382	Potato	cytosol	33.16	41.56
PGSC0003DMT400030385	Potato	cytosol	35.23	41.46
GSMUA_Achr7P14910_001	Banana	cytosol	35.23	40.48
GSMUA_Achr8P00290_001	Banana	cytosol	29.53	39.31
PGSC0003DMT400049225	Potato	mitochondrion	47.15	38.89
PGSC0003DMT400030381	Potato	mitochondrion	24.35	38.21
KRH00090	Soybean	cytosol	32.12	36.26
KRH49235	Soybean	cytosol	29.02	35.9
PGSC0003DMT400079950	Potato	cytosol	31.09	35.5
PGSC0003DMT400032851	Potato	cytosol	25.39	34.75
PGSC0003DMT400044066	Potato	cytosol	24.87	34.29
PGSC0003DMT400088908	Potato	cytosol	17.62	32.69
PGSC0003DMT400060736	Potato	mitochondrion	24.35	32.41
KRH62434	Soybean	cytosol	23.83	29.3
Os01t0135900-02	Rice	plasma membrane	24.87	28.92
TraesCS3B01G048700.1	Wheat	cytosol	24.35	28.66
HORVU3Hr1G006930.1	Barley	cytosol	23.83	27.88
EES02533	Sorghum	cytosol	23.32	27.27
TraesCS3B01G048800.1	Wheat	cytosol	23.32	27.27
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	26.94	27.23
TraesCS3A01G035400.1	Wheat	cytosol	22.8	26.67
Zm00001d039941_P001	Maize	cytosol	22.28	25.9
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	25.39	25.65
PGSC0003DMT400023932	Potato	endoplasmic reticulum	25.39	24.87
TraesCS3A01G035500.1	Wheat	mitochondrion, plastid	24.87	23.08
HORVU3Hr1G006940.2	Barley	cytosol	23.32	18.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400030603	EnsemblPlantsGene:PGSC0003DMG400011719	EntrezGene:102601300	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF184	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400011719	RefSeq:XP_006357575.1	SUPFAM:SSF49764	UniParc:UPI0002957FE6	UniProt:M1AUH4
MapMan:35.1	:	:	:	:	:

Description

18.5 kDa class I heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011719]

Coordinates

chr9:+:888985..890624

Molecular Weight (calculated)

22710.7 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.950

Length

193 amino acids

Sequence
(BLAST)

001: MPLFGGRRNH AHQVHDPYSD HQTHKVHDPY SRPSHPVYDP YSEHAHQVHD PFAHHEVWDP FHEFYLENPR SLIAPAPSFH HVPATMAQIE YKETPEAHIF
101: RCNLHGYKKE DVKVQVEDEK ILKITGETRM MKKEDNWHHY ERSSGKFLTS FSLPLNSRAD YVKSSMENGV LTITVPKKEI RRNQPHLRSV QIN

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.