Factsheet for PGSC0003DMT400030382

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030387	Potato	cytosol	94.16	94.16
PGSC0003DMT400030386	Potato	cytosol	92.86	91.08
PGSC0003DMT400030385	Potato	cytosol	93.51	87.8
Solyc09g015020.1.1	Tomato	cytosol, nucleus	87.66	87.66
PGSC0003DMT400007587	Potato	cytosol	84.42	83.87
PGSC0003DMT400089913	Potato	cytosol	78.57	79.08
PGSC0003DMT400030381	Potato	mitochondrion	62.34	78.05
VIT_13s0019g03030.t01	Wine grape	cytosol	51.3	73.15
VIT_13s0019g03090.t01	Wine grape	cytosol	75.32	72.5
VIT_13s0019g02900.t01	Wine grape	cytosol	50.65	72.22
VIT_13s0019g02920.t01	Wine grape	cytosol	63.64	72.06
VIT_13s0019g03160.t01	Wine grape	cytosol	74.03	71.25
PGSC0003DMT400088908	Potato	cytosol	47.4	70.19
GSMUA_Achr9P00510_001	Banana	cytosol	70.13	68.79
PGSC0003DMT400078201	Potato	cytosol	68.18	68.18
GSMUA_Achr1P21160_001	Banana	cytosol	67.53	66.67
PGSC0003DMT400078008	Potato	cytosol	66.23	66.23
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	61.69	65.97
PGSC0003DMT400078006	Potato	cytosol	65.58	65.58
PGSC0003DMT400078007	Potato	cytosol	64.94	64.94
PGSC0003DMT400078202	Potato	cytosol	64.29	64.29
PGSC0003DMT400038705	Potato	cytosol	55.19	63.91
GSMUA_Achr5P17640_001	Banana	cytosol	34.42	59.55
PGSC0003DMT400044066	Potato	cytosol	51.3	56.43
VIT_13s0019g03050.t01	Wine grape	cytosol	60.39	56.36
TraesCS4B01G211700.1	Wheat	cytosol	40.26	50.0
PGSC0003DMT400032851	Potato	cytosol	43.51	47.52
PGSC0003DMT400079950	Potato	cytosol	48.05	43.79
PGSC0003DMT400060736	Potato	mitochondrion	38.31	40.69
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	44.81	36.13
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	42.86	34.55
PGSC0003DMT400030603	Potato	cytosol	41.56	33.16
PGSC0003DMT400049226	Potato	cytosol	40.26	31.79
PGSC0003DMT400023932	Potato	endoplasmic reticulum	40.26	31.47
PGSC0003DMT400049225	Potato	mitochondrion	40.91	26.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400030382	EnsemblPlantsGene:PGSC0003DMG400011628	EntrezGene:102589396	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400011628	RefSeq:XP_006360822.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000296E3FE
UniProt:M1AU51	MapMan:19.1.8.1	:	:	:	:

Description

Chloroplast small heat shock protein class I [Source:PGSC_GENE;Acc:PGSC0003DMG400011628]

Coordinates

chr9:-:11636814..11637710

Molecular Weight (calculated)

17483.8 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.676

Length

154 amino acids

Sequence
(BLAST)

001: MSLIPSFFGG RKSNIFDPFS LDLFEGFPIS TNVPSSAREV SAFANAKMDW KETPEAHIFK VDVPGIKKEE VKVEVEEGRI LQISGERSRE QEEKNDQWHR
101: VERSSGKFLR RFRLPENTKT GEIKAAMENG VLTVTLPKEE EKKKSEVKAI DISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.