Factsheet for PGSC0003DMT400030387

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030382	Potato	cytosol	94.16	94.16
PGSC0003DMT400030386	Potato	cytosol	95.45	93.63
PGSC0003DMT400030385	Potato	cytosol	98.05	92.07
Solyc09g015020.1.1	Tomato	cytosol, nucleus	91.56	91.56
PGSC0003DMT400007587	Potato	cytosol	88.31	87.74
PGSC0003DMT400089913	Potato	cytosol	81.82	82.35
PGSC0003DMT400030381	Potato	mitochondrion	63.64	79.67
VIT_13s0019g03030.t01	Wine grape	cytosol	52.6	75.0
VIT_13s0019g03090.t01	Wine grape	cytosol	77.27	74.38
VIT_13s0019g02900.t01	Wine grape	cytosol	51.95	74.07
VIT_13s0019g03160.t01	Wine grape	cytosol	76.62	73.75
PGSC0003DMT400088908	Potato	cytosol	49.35	73.08
VIT_13s0019g02920.t01	Wine grape	cytosol	62.99	71.32
GSMUA_Achr9P00510_001	Banana	cytosol	71.43	70.06
PGSC0003DMT400078201	Potato	cytosol	68.83	68.83
GSMUA_Achr1P21160_001	Banana	cytosol	68.83	67.95
PGSC0003DMT400078008	Potato	cytosol	67.53	67.53
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	62.34	66.67
PGSC0003DMT400078202	Potato	cytosol	65.58	65.58
PGSC0003DMT400078006	Potato	cytosol	65.58	65.58
PGSC0003DMT400078007	Potato	cytosol	64.94	64.94
PGSC0003DMT400038705	Potato	cytosol	54.55	63.16
GSMUA_Achr5P17640_001	Banana	cytosol	35.71	61.8
PGSC0003DMT400044066	Potato	cytosol	51.3	56.43
VIT_13s0019g03050.t01	Wine grape	cytosol	59.74	55.76
TraesCS4B01G211700.1	Wheat	cytosol	42.21	52.42
PGSC0003DMT400032851	Potato	cytosol	43.51	47.52
PGSC0003DMT400079950	Potato	cytosol	48.7	44.38
PGSC0003DMT400060736	Potato	mitochondrion	38.31	40.69
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	44.16	35.6
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	44.16	35.6
PGSC0003DMT400030603	Potato	cytosol	44.16	35.23
PGSC0003DMT400049226	Potato	cytosol	41.56	32.82
PGSC0003DMT400023932	Potato	endoplasmic reticulum	40.26	31.47
PGSC0003DMT400049225	Potato	mitochondrion	42.86	28.21

Protein Annotations

EntrezGene:102588416	MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	UniProt:M1AU55	PFAM:PF00011	EnsemblPlantsGene:PGSC0003DMG400011632	PGSC:PGSC0003DMG400011632
EnsemblPlants:PGSC0003DMT400030387	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	SUPFAM:SSF49764	UniParc:UPI000295A220
RefSeq:XP_006360819.1	SEG:seg	:	:	:	:

Description

Chloroplast small heat shock protein class I [Source:PGSC_GENE;Acc:PGSC0003DMG400011632]

Coordinates

chr9:-:11684152..11685032

Molecular Weight (calculated)

17534.8 Da

IEP (calculated)

6.565

GRAVY (calculated)

-0.725

Length

154 amino acids

Sequence
(BLAST)

001: MSLIPSFFGG RKSNIFDPFS LDLWDPFPIS TNAPSSAREV SAFANAKIDW KETPEAHVFK VDVPGIKKEE VRVEVEEGRI LQISGERSRE QEEKNDQWHR
101: MERSSGKFLR RFRLPENTKT GEIKAAMENG VLTVTVPKEE EKKKSEVKAI DISG

Best Arabidopsis Sequence Match ( AT3G46230.1 )
(BLAST)

001: MSLVPSFFGG RRTNVFDPFS LDVWDPFEGF LTPGLTNAPA KDVAAFTNAK VDWRETPEAH VFKADVPGLK KEEVKVEVED GNILQISGER SSENEEKSDT
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG

Arabidopsis Description

HSP17.4A17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.