Factsheet for VIT_13s0019g02900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03030.t01	Wine grape	cytosol	92.59	92.59
VIT_13s0019g02920.t01	Wine grape	cytosol	85.19	67.65
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	86.11	64.58
PGSC0003DMT400030381	Potato	mitochondrion	67.59	59.35
VIT_08s0058g00210.t01	Wine grape	cytosol	77.78	56.76
VIT_13s0019g02760.t01	Wine grape	cytosol	73.15	56.43
VIT_06s0004g05770.t01	Wine grape	cytosol	75.0	56.25
VIT_13s0019g03090.t01	Wine grape	cytosol	81.48	55.0
VIT_13s0019g03000.t01	Wine grape	cytosol	81.48	55.0
VIT_13s0019g02930.t01	Wine grape	cytosol	81.48	55.0
VIT_13s0019g02850.t01	Wine grape	cytosol	74.07	52.98
VIT_13s0019g02780.t01	Wine grape	cytosol	74.07	52.98
VIT_13s0019g02770.t01	Wine grape	cytosol	73.15	52.32
VIT_13s0019g02820.t01	Wine grape	cytosol	73.15	52.32
PGSC0003DMT400089913	Potato	cytosol	74.07	52.29
PGSC0003DMT400030387	Potato	cytosol	74.07	51.95
VIT_13s0019g02840.t01	Wine grape	cytosol	72.22	51.66
PGSC0003DMT400007587	Potato	cytosol	74.07	51.61
VIT_13s0019g02740.t01	Wine grape	cytosol	71.3	50.99
PGSC0003DMT400030386	Potato	cytosol	74.07	50.96
VIT_13s0019g03050.t01	Wine grape	cytosol	77.78	50.91
Solyc09g015020.1.1	Tomato	cytosol, nucleus	72.22	50.65
PGSC0003DMT400030382	Potato	cytosol	72.22	50.65
VIT_13s0019g03160.t01	Wine grape	cytosol	75.0	50.62
PGSC0003DMT400030385	Potato	cytosol	74.07	48.78
VIT_13s0019g03170.t01	Wine grape	cytosol	69.44	47.17
Solyc09g015000.2.1	Tomato	cytosol	58.33	47.01
VIT_19s0085g01050.t01	Wine grape	cytosol	54.63	40.41
PGSC0003DMT400088908	Potato	cytosol	34.26	35.58
VIT_18s0001g01570.t01	Wine grape	mitochondrion	52.78	34.97
VIT_18s0001g01610.t01	Wine grape	cytosol	49.07	33.33
VIT_13s0019g00860.t01	Wine grape	cytosol	43.52	33.1
TraesCS4B01G211700.1	Wheat	cytosol	34.26	29.84
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	50.93	29.57
VIT_12s0035g01910.t01	Wine grape	cytosol	48.15	20.8

Protein Annotations

ArrayExpress:VIT_13s0019g02900	EMBL:FN595998	EnsemblPlants:VIT_13s0019g02900.t01	EnsemblPlantsGene:VIT_13s0019g02900	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241
PFAM:PF00011	PFscan:PS01031	ProteinID:CCB56269	ProteinID:CCB56269.1	SEG:seg	SUPFAM:SSF49764
UniParc:UPI00015C9322	UniProt:F6HNQ0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr13:-:4100368..4100849

Molecular Weight (calculated)

12640.2 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.798

Length

108 amino acids

Sequence
(BLAST)

001: MRVDWKETLV AHVFNADLPG LKKEEVKVEV EEGRVLQINR ERSKEQEEKN DKWHLMERSS GKFLRRFRLL EDAKTDEVKA NMENGVMSVT VPKEEVKKAE
101: VKAIEIFG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.