Factsheet for VIT_13s0019g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g02320.t01
VIT_01s0011g02330.t01
VIT_05s0020g03180.t01
VIT_06s0009g01910.t01
VIT_07s0151g01000.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37670.1	VIT_05s0020g03180.t01	AT1G03130.1	21798944
AT5G37670.1	VIT_07s0151g01000.t01	AT1G03130.1	21798944
AT5G37670.1	VIT_01s0011g02320.t01	AT1G13520.1	21798944
AT5G37670.1	VIT_01s0011g02330.t01	AT1G13520.1	21798944
AT5G37670.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G37670.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G37670.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT5G37670.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17351	Soybean	mitochondrion	67.61	66.67
KRH72979	Soybean	cytosol, mitochondrion, peroxisome	66.9	65.97
PGSC0003DMT400060736	Potato	mitochondrion	65.49	64.14
Solyc04g014480.2.1	Tomato	mitochondrion	64.79	63.45
Bra028141.1-P	Field mustard	cytosol	59.15	60.43
CDY01718	Canola	cytosol	59.15	60.43
CDY60723	Canola	cytosol	59.15	60.43
AT5G37670.1	Thale cress	cytosol	56.34	58.39
GSMUA_Achr9P27260_001	Banana	peroxisome	49.3	48.28
Os06t0253100-01	Rice	mitochondrion	48.59	47.26
TraesCS7A01G202200.1	Wheat	mitochondrion, peroxisome	45.77	47.1
TraesCS7D01G205400.1	Wheat	nucleus	45.07	46.38
TraesCS7B01G109100.1	Wheat	mitochondrion, peroxisome	45.07	46.38
Zm00001d044728_P001	Maize	mitochondrion	46.48	45.21
EER89539	Sorghum	mitochondrion	46.48	44.59
VIT_13s0019g03030.t01	Wine grape	cytosol	33.8	44.44
VIT_13s0019g02900.t01	Wine grape	cytosol	33.1	43.52
VIT_06s0004g05770.t01	Wine grape	cytosol	41.55	40.97
VIT_08s0058g00210.t01	Wine grape	cytosol	42.25	40.54
VIT_13s0019g02760.t01	Wine grape	cytosol	38.73	39.29
HORVU0Hr1G020420.1	Barley	plastid	47.18	39.18
VIT_13s0019g03170.t01	Wine grape	cytosol	43.66	38.99
VIT_13s0019g02770.t01	Wine grape	cytosol	40.85	38.41
VIT_13s0019g02740.t01	Wine grape	cytosol	40.85	38.41
VIT_13s0019g02780.t01	Wine grape	cytosol	40.85	38.41
VIT_13s0019g02850.t01	Wine grape	cytosol	40.85	38.41
VIT_13s0019g03090.t01	Wine grape	cytosol	42.96	38.12
VIT_13s0019g02840.t01	Wine grape	cytosol	40.14	37.75
VIT_13s0019g02820.t01	Wine grape	cytosol	40.14	37.75
VIT_13s0019g03000.t01	Wine grape	cytosol	41.55	36.88
VIT_13s0019g02920.t01	Wine grape	cytosol	35.21	36.76
VIT_13s0019g02930.t01	Wine grape	cytosol	40.85	36.25
VIT_13s0019g03160.t01	Wine grape	cytosol	40.85	36.25
VIT_19s0085g01050.t01	Wine grape	cytosol	35.92	34.93
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	34.51	34.03
VIT_13s0019g03050.t01	Wine grape	cytosol	38.03	32.73
VIT_18s0001g01610.t01	Wine grape	cytosol	35.21	31.45
VIT_18s0001g01570.t01	Wine grape	mitochondrion	34.51	30.06
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	34.51	26.34
VIT_12s0035g01910.t01	Wine grape	cytosol	37.32	21.2

Protein Annotations

EntrezGene:100254799	wikigene:100254799	MapMan:19.1.8.10	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	UniProt:A5BIM9
EMBL:AM460735	ProteinID:CAN65698	ProteinID:CAN65698.1	ProteinID:CCB56364	ProteinID:CCB56364.1	EMBL:FN595998
GO:GO:0000302	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0005782	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EntrezGene:LOC100254799
wikigene:LOC100254799	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF142	SUPFAM:SSF49764
TIGR:TC60971	UniParc:UPI0001520FE7	ArrayExpress:VIT_13s0019g00860	EnsemblPlantsGene:VIT_13s0019g00860	EnsemblPlants:VIT_13s0019g00860.t01	RefSeq:XP_002283860
RefSeq:XP_002283860.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:2689279..2690178

Molecular Weight (calculated)

15814.9 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.311

Length

142 amino acids

Sequence
(BLAST)

001: MSESIRGFPF RRIFWGAPVF RDLSGSTAPM DWLESPAAHI FKFDVPGLSK DDIKVEIEDG NVLRVYRVAG GREESVVKDT VWHIAERGGG RGEFSREFEL
101: PENVKVDQIK AQVENGVLTI VVPKDTSPKA SKVKTINISS KL

Best Arabidopsis Sequence Match ( AT5G37670.1 )
(BLAST)

001: MADRGIFLYP FRRFQEWSRS TALIDWMESN NSHIFKINVP GYNKEDIKVQ IEEGNVLSIR GEGIKEEKKE NLVWHVAERE AFSGGGSEFL RRIELPENVK
101: VDQVKAYVEN GVLTVVVPKD TSSKSSKVRN VNITSKL

Arabidopsis Description

HSP15.715.7 kDa heat shock protein, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.