Factsheet for VIT_13s0019g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02780.t01	Wine grape	cytosol	99.34	99.34
VIT_13s0019g02770.t01	Wine grape	cytosol	95.36	95.36
VIT_13s0019g02820.t01	Wine grape	cytosol	95.36	95.36
VIT_13s0019g02840.t01	Wine grape	cytosol	95.36	95.36
VIT_13s0019g02760.t01	Wine grape	cytosol	87.42	94.29
VIT_13s0019g02740.t01	Wine grape	cytosol	91.39	91.39
VIT_13s0019g03030.t01	Wine grape	cytosol	53.64	75.0
VIT_13s0019g02900.t01	Wine grape	cytosol	52.98	74.07
VIT_06s0004g05770.t01	Wine grape	cytosol	69.54	72.92
VIT_13s0019g02920.t01	Wine grape	cytosol	64.24	71.32
VIT_13s0019g02930.t01	Wine grape	cytosol	75.5	71.25
VIT_13s0019g03000.t01	Wine grape	cytosol	75.5	71.25
VIT_13s0019g03090.t01	Wine grape	cytosol	73.51	69.38
VIT_08s0058g00210.t01	Wine grape	cytosol	67.55	68.92
VIT_13s0019g03160.t01	Wine grape	cytosol	72.19	68.12
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	62.25	65.28
VIT_13s0019g03170.t01	Wine grape	cytosol	66.89	63.52
VIT_13s0019g03050.t01	Wine grape	cytosol	62.25	56.97
VIT_18s0001g01570.t01	Wine grape	mitochondrion	49.01	45.4
VIT_18s0001g01610.t01	Wine grape	cytosol	47.02	44.65
VIT_19s0085g01050.t01	Wine grape	cytosol	43.05	44.52
VIT_13s0019g00860.t01	Wine grape	cytosol	38.41	40.85
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	41.06	33.33
VIT_12s0035g01910.t01	Wine grape	cytosol	41.72	25.2

Protein Annotations

EntrezGene:100242821	wikigene:100242821	MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:ACZ48682
ProteinID:ACZ48682.1	ProteinID:CCB56274	ProteinID:CCB56274.1	UniProt:F6HNQ5	EMBL:FN595998	EMBL:GU169699
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EntrezGene:LOC100242821	wikigene:LOC100242821
PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	SUPFAM:SSF49764	TIGR:TC53426
TIGR:TC68250	UniParc:UPI00015C9328	ArrayExpress:VIT_13s0019g02850	EnsemblPlantsGene:VIT_13s0019g02850	EnsemblPlants:VIT_13s0019g02850.t01	RefSeq:XP_002281220
RefSeq:XP_002281220.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:4048636..4049360

Molecular Weight (calculated)

17052.2 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.590

Length

151 amino acids

Sequence
(BLAST)

001: MSLIPSFFGG RRNNTFDLWD PFQDFPFTSG ALSVPGETAS FASTRIDWKE TPEAHVFKAD LPGVKKEEVK VEVEEGRILQ ISGDRSVEKE EKNDKWHRVE
101: RSSGKFMRRF RLPENVKVDE VKAAMENGVL TVTVPKAEVQ KPDVKAIDIS G

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.