Factsheet for VIT_13s0019g02820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02770.t01	Wine grape	cytosol	98.68	98.68
VIT_13s0019g02760.t01	Wine grape	cytosol	91.39	98.57
VIT_13s0019g02840.t01	Wine grape	cytosol	98.01	98.01
VIT_13s0019g02780.t01	Wine grape	cytosol	96.03	96.03
VIT_13s0019g02850.t01	Wine grape	cytosol	95.36	95.36
VIT_13s0019g02740.t01	Wine grape	cytosol	93.38	93.38
VIT_13s0019g03030.t01	Wine grape	cytosol	52.98	74.07
VIT_13s0019g02900.t01	Wine grape	cytosol	52.32	73.15
VIT_06s0004g05770.t01	Wine grape	cytosol	68.21	71.53
VIT_13s0019g02920.t01	Wine grape	cytosol	64.24	71.32
VIT_13s0019g02930.t01	Wine grape	cytosol	74.83	70.62
VIT_13s0019g03000.t01	Wine grape	cytosol	74.83	70.62
VIT_13s0019g03090.t01	Wine grape	cytosol	72.85	68.75
VIT_08s0058g00210.t01	Wine grape	cytosol	66.89	68.24
VIT_13s0019g03160.t01	Wine grape	cytosol	71.52	67.5
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	62.25	65.28
VIT_13s0019g03170.t01	Wine grape	cytosol	66.23	62.89
VIT_13s0019g03050.t01	Wine grape	cytosol	62.91	57.58
VIT_18s0001g01570.t01	Wine grape	mitochondrion	49.01	45.4
VIT_19s0085g01050.t01	Wine grape	cytosol	43.05	44.52
VIT_18s0001g01610.t01	Wine grape	cytosol	45.7	43.4
VIT_13s0019g00860.t01	Wine grape	cytosol	37.75	40.14
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	41.06	33.33
VIT_12s0035g01910.t01	Wine grape	cytosol	40.4	24.4

Protein Annotations

EntrezGene:100265108	wikigene:100265108	MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CCB56277
ProteinID:CCB56277.1	UniProt:F6HNQ8	EMBL:FN595998	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100265108	wikigene:LOC100265108	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF241	SUPFAM:SSF49764	TIGR:TC58343	TIGR:TC60463	UniParc:UPI00019847FB	ArrayExpress:VIT_13s0019g02820
EnsemblPlantsGene:VIT_13s0019g02820	EnsemblPlants:VIT_13s0019g02820.t01	unigene:Vvi.26284	RefSeq:XP_002281285	RefSeq:XP_002281285.1	SEG:seg

Description

No Description!

Coordinates

chr13:+:4036190..4036907

Molecular Weight (calculated)

17123.3 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.591

Length

151 amino acids

Sequence
(BLAST)

001: MSLIPSFFSG RRNNMFDLWD PFQDFPFTGG ALSVPGETAS FANTRIDWKE TPEAHVFKAD LPGVKKEEVK VEVEEGRILQ ISGDRSVEKE EKNDKWHRVE
101: RSSGQFMRRF RLPENVKVEE VKAAMENGVL TVTVPKAEVK KPDVKAIDIS G

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.