Factsheet for VIT_13s0019g02740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02770.t01	Wine grape	cytosol	93.38	93.38
VIT_13s0019g02820.t01	Wine grape	cytosol	93.38	93.38
VIT_13s0019g02840.t01	Wine grape	cytosol	92.72	92.72
VIT_13s0019g02760.t01	Wine grape	cytosol	85.43	92.14
VIT_13s0019g02780.t01	Wine grape	cytosol	92.05	92.05
VIT_13s0019g02850.t01	Wine grape	cytosol	91.39	91.39
VIT_13s0019g03030.t01	Wine grape	cytosol	51.66	72.22
VIT_06s0004g05770.t01	Wine grape	cytosol	68.21	71.53
VIT_13s0019g02900.t01	Wine grape	cytosol	50.99	71.3
VIT_13s0019g02930.t01	Wine grape	cytosol	74.83	70.62
VIT_13s0019g03000.t01	Wine grape	cytosol	74.83	70.62
VIT_13s0019g02920.t01	Wine grape	cytosol	62.25	69.12
VIT_13s0019g03090.t01	Wine grape	cytosol	72.19	68.12
VIT_13s0019g03160.t01	Wine grape	cytosol	70.86	66.88
VIT_08s0058g00210.t01	Wine grape	cytosol	64.9	66.22
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	60.93	63.89
VIT_13s0019g03170.t01	Wine grape	cytosol	64.24	61.01
VIT_13s0019g03050.t01	Wine grape	cytosol	61.59	56.36
VIT_19s0085g01050.t01	Wine grape	cytosol	42.38	43.84
VIT_18s0001g01570.t01	Wine grape	mitochondrion	47.02	43.56
VIT_18s0001g01610.t01	Wine grape	cytosol	44.37	42.14
VIT_13s0019g00860.t01	Wine grape	cytosol	38.41	40.85
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	42.38	34.41
VIT_12s0035g01910.t01	Wine grape	cytosol	41.06	24.8

Protein Annotations

EntrezGene:100261497	wikigene:100261497	MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CCB56283
ProteinID:CCB56283.1	UniProt:F6HNR4	EMBL:FN595998	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100261497	wikigene:LOC100261497	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF241	SUPFAM:SSF49764	TIGR:TC53479	TIGR:TC55879	UniParc:UPI00015C9331	ArrayExpress:VIT_13s0019g02740
EnsemblPlantsGene:VIT_13s0019g02740	EnsemblPlants:VIT_13s0019g02740.t01	unigene:Vvi.24439	RefSeq:XP_002281456	RefSeq:XP_002281456.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:3999388..4000084

Molecular Weight (calculated)

17174.6 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.553

Length

151 amino acids

Sequence
(BLAST)

001: MSLIPNFLGG RRNNMFDMWD PFQDFPFTGG ALSVPGETAS FANTRIDWKE TPEAHVFKAD LPGVKKEEVK VEVEEGRILQ ISGDRSIEKE EKNDKWHRVE
101: RSSGKFMRWF RLPENVKVEE VKAGMENGVL TVIVPKAEVK KPDVKVIDIS G

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.