Factsheet for VIT_18s0001g01570.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g01610.t01	Wine grape	cytosol	65.64	67.3
PGSC0003DMT400079950	Potato	cytosol	61.96	59.76
KRH70223	Soybean	cytosol, nucleus	55.21	58.82
Solyc04g072250.2.1	Tomato	cytosol	56.44	56.44
VIT_13s0019g03030.t01	Wine grape	cytosol	35.58	53.7
TraesCS7B01G088700.1	Wheat	cytosol	51.53	53.16
VIT_13s0019g02900.t01	Wine grape	cytosol	34.97	52.78
TraesCS7B01G088600.1	Wheat	cytosol	50.92	52.53
TraesCS7D01G185500.1	Wheat	cytosol	51.53	52.5
TraesCS7D01G185600.1	Wheat	cytosol	42.33	50.0
VIT_06s0004g05770.t01	Wine grape	cytosol	44.17	50.0
VIT_13s0019g02840.t01	Wine grape	cytosol	46.01	49.67
VIT_13s0019g02770.t01	Wine grape	cytosol	46.01	49.67
TraesCS7A01G183800.1	Wheat	cytosol	46.63	49.03
VIT_13s0019g02820.t01	Wine grape	cytosol	45.4	49.01
VIT_13s0019g02850.t01	Wine grape	cytosol	45.4	49.01
VIT_13s0019g02780.t01	Wine grape	cytosol	45.4	49.01
VIT_13s0019g02760.t01	Wine grape	cytosol	41.72	48.57
VIT_08s0058g00210.t01	Wine grape	cytosol	43.56	47.97
VIT_13s0019g03090.t01	Wine grape	cytosol	46.63	47.5
VIT_13s0019g02740.t01	Wine grape	cytosol	43.56	47.02
VIT_13s0019g02920.t01	Wine grape	cytosol	38.65	46.32
VIT_13s0019g02930.t01	Wine grape	cytosol	44.79	45.62
VIT_13s0019g03170.t01	Wine grape	cytosol	44.17	45.28
VIT_13s0019g03000.t01	Wine grape	cytosol	44.17	45.0
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	39.26	44.44
VIT_13s0019g03160.t01	Wine grape	cytosol	43.56	44.38
VIT_13s0019g03050.t01	Wine grape	cytosol	38.04	37.58
VIT_13s0019g00860.t01	Wine grape	cytosol	30.06	34.51
VIT_19s0085g01050.t01	Wine grape	cytosol	30.67	34.25
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	36.2	31.72
VIT_12s0035g01910.t01	Wine grape	cytosol	36.2	23.6

Protein Annotations

EntrezGene:100256188	wikigene:100256188	Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	EMBL:AM473916
ProteinID:CAN63935	ProteinID:CAN63935.1	ProteinID:CBI29332	ProteinID:CBI29332.3	UniProt:D7TFQ9	EMBL:FN595772
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EntrezGene:LOC100256188	wikigene:LOC100256188
PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF133	SUPFAM:SSF49764	TIGR:TC54826
UniParc:UPI00015CD3D9	ArrayExpress:VIT_18s0001g01570	EnsemblPlantsGene:VIT_18s0001g01570	EnsemblPlants:VIT_18s0001g01570.t01	unigene:Vvi.6156	RefSeq:XP_002265260
RefSeq:XP_002265260.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18_random:+:2135300..2136089

Molecular Weight (calculated)

18284.4 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.790

Length

163 amino acids

Sequence
(BLAST)

001: MRGGKRMTSL VPWRGGGLDH WIGSPFSSEL WDPLGFGSRD WRRGRDDDVS AVALASVDWR ETDNAHTIRA DLPGVRKEDV KVQVEDGNIL QISGEKTKEK
101: EESGERWHRI ERQRGSFLRR FRLPENANTE GINCALENGV LTVTVPKKEA TSTGSDVKQI DIG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.