Factsheet for VIT_13s0019g02920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	94.85	89.58
VIT_13s0019g03030.t01	Wine grape	cytosol	69.85	87.96
VIT_13s0019g02900.t01	Wine grape	cytosol	67.65	85.19
VIT_08s0058g00210.t01	Wine grape	cytosol	75.74	69.59
VIT_13s0019g03090.t01	Wine grape	cytosol	81.62	69.38
VIT_13s0019g02930.t01	Wine grape	cytosol	80.15	68.12
VIT_13s0019g03000.t01	Wine grape	cytosol	80.15	68.12
VIT_13s0019g02760.t01	Wine grape	cytosol	68.38	66.43
VIT_13s0019g03160.t01	Wine grape	cytosol	76.47	65.0
VIT_13s0019g02850.t01	Wine grape	cytosol	71.32	64.24
VIT_13s0019g02820.t01	Wine grape	cytosol	71.32	64.24
VIT_13s0019g02770.t01	Wine grape	cytosol	71.32	64.24
VIT_13s0019g02780.t01	Wine grape	cytosol	71.32	64.24
VIT_06s0004g05770.t01	Wine grape	cytosol	67.65	63.89
PGSC0003DMT400030382	Potato	cytosol	72.06	63.64
VIT_13s0019g02840.t01	Wine grape	cytosol	70.59	63.58
PGSC0003DMT400030387	Potato	cytosol	71.32	62.99
PGSC0003DMT400089913	Potato	cytosol	70.59	62.75
PGSC0003DMT400030381	Potato	mitochondrion	56.62	62.6
PGSC0003DMT400007587	Potato	cytosol	71.32	62.58
VIT_13s0019g02740.t01	Wine grape	cytosol	69.12	62.25
PGSC0003DMT400030386	Potato	cytosol	71.32	61.78
Solyc09g015020.1.1	Tomato	cytosol, nucleus	68.38	60.39
PGSC0003DMT400030385	Potato	cytosol	71.32	59.15
Solyc09g015000.2.1	Tomato	cytosol	57.35	58.21
VIT_13s0019g03170.t01	Wine grape	cytosol	67.65	57.86
VIT_13s0019g03050.t01	Wine grape	cytosol	68.38	56.36
PGSC0003DMT400088908	Potato	cytosol	36.03	47.12
TraesCS4B01G211700.1	Wheat	cytosol	38.97	42.74
VIT_19s0085g01050.t01	Wine grape	cytosol	45.59	42.47
VIT_18s0001g01570.t01	Wine grape	mitochondrion	46.32	38.65
VIT_18s0001g01610.t01	Wine grape	cytosol	44.12	37.74
VIT_13s0019g00860.t01	Wine grape	cytosol	36.76	35.21
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	44.12	32.26
VIT_12s0035g01910.t01	Wine grape	cytosol	44.12	24.0

Protein Annotations

ArrayExpress:VIT_13s0019g02920	EMBL:FN595998	EnsemblPlants:VIT_13s0019g02920.t01	EnsemblPlantsGene:VIT_13s0019g02920	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241
PFAM:PF00011	PFscan:PS01031	ProteinID:CCB56267	ProteinID:CCB56267.1	SEG:seg	SUPFAM:SSF49764
UniParc:UPI000210AA4E	UniProt:F6HNP8	MapMan:19.1.8.1	:	:	:

Description

No Description!

Coordinates

chr13:-:4108657..4109160

Molecular Weight (calculated)

15270.1 Da

IEP (calculated)

5.764

GRAVY (calculated)

-0.552

Length

136 amino acids

Sequence
(BLAST)

001: MSLIPSFPFN ATLSNIPSTV GETSAFTNTR VDWKETLVAH VFKADLPGLK KEEVKVEVEE GRVLQISGER SKEQEEKNDK WHHVDRSSGK FLCRFRLPED
101: AKTDEVKASI ENGVLTMTIP KEEVKKAEVK AIEISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.