Factsheet for PGSC0003DMT400030386

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030387	Potato	cytosol	93.63	95.45
Solyc09g015000.2.1	Tomato	cytosol	80.89	94.78
PGSC0003DMT400030382	Potato	cytosol	91.08	92.86
PGSC0003DMT400007587	Potato	cytosol	87.9	89.03
PGSC0003DMT400030385	Potato	cytosol	92.99	89.02
PGSC0003DMT400089913	Potato	cytosol	82.17	84.31
PGSC0003DMT400030381	Potato	mitochondrion	61.78	78.86
VIT_13s0019g03090.t01	Wine grape	cytosol	78.98	77.5
VIT_13s0019g03160.t01	Wine grape	cytosol	77.71	76.25
VIT_13s0019g03030.t01	Wine grape	cytosol	51.59	75.0
VIT_13s0019g02900.t01	Wine grape	cytosol	50.96	74.07
GSMUA_Achr9P00510_001	Banana	cytosol	73.25	73.25
PGSC0003DMT400088908	Potato	cytosol	47.77	72.12
PGSC0003DMT400078201	Potato	cytosol	70.06	71.43
VIT_13s0019g02920.t01	Wine grape	cytosol	61.78	71.32
PGSC0003DMT400078008	Potato	cytosol	68.79	70.13
GSMUA_Achr1P21160_001	Banana	cytosol	69.43	69.87
PGSC0003DMT400078202	Potato	cytosol	66.88	68.18
PGSC0003DMT400078007	Potato	cytosol	66.88	68.18
PGSC0003DMT400078006	Potato	cytosol	66.88	68.18
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	61.78	67.36
PGSC0003DMT400038705	Potato	cytosol	55.41	65.41
GSMUA_Achr5P17640_001	Banana	cytosol	35.67	62.92
TraesCS4B01G211700.1	Wheat	cytosol	44.59	56.45
PGSC0003DMT400044066	Potato	cytosol	50.32	56.43
VIT_13s0019g03050.t01	Wine grape	cytosol	58.6	55.76
PGSC0003DMT400032851	Potato	cytosol	43.95	48.94
PGSC0003DMT400079950	Potato	cytosol	49.04	45.56
PGSC0003DMT400060736	Potato	mitochondrion	38.22	41.38
PGSC0003DMT400030603	Potato	cytosol	45.22	36.79
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	43.95	36.13
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	43.95	36.13
PGSC0003DMT400049226	Potato	cytosol	42.68	34.36
PGSC0003DMT400023932	Potato	endoplasmic reticulum	41.4	32.99
PGSC0003DMT400049225	Potato	mitochondrion	42.68	28.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400030386	EnsemblPlantsGene:PGSC0003DMG400011631	EntrezGene:102588746	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400011631	RefSeq:XP_006360820.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000295E120
UniProt:M1AU54	MapMan:19.1.8.1	:	:	:	:

Description

Chloroplast small heat shock protein class I [Source:PGSC_GENE;Acc:PGSC0003DMG400011631]

Coordinates

chr9:-:11678942..11679778

Molecular Weight (calculated)

17882.2 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.718

Length

157 amino acids

Sequence
(BLAST)

001: MSLIPSFFGG RRSNIFDPFS LDLWDPFEGF PISTNVPSSA REISAFANAK IDWKETPEAH TFKVDVPGIK KEEVKVEVEE GRILQISGER SREKEEKNDQ
101: WHRMERSSGK FLRRFRLPEN AKTGEIKAAM ENGVLTVTVP KEEEKKKSEV KAIDISG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.