Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018802 | |
| PGSC0003DMT400076768 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07400.1 | PGSC0003DMT400018802 | AT4G02150.1 | 21798944 |
| AT1G07400.1 | PGSC0003DMT400076768 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g076540.1.1 | Tomato | cytosol, nucleus | 96.75 | 96.75 |
| PGSC0003DMT400078201 | Potato | cytosol | 94.81 | 94.81 |
| PGSC0003DMT400078008 | Potato | cytosol | 94.81 | 94.81 |
| PGSC0003DMT400078006 | Potato | cytosol | 94.16 | 94.16 |
| PGSC0003DMT400078007 | Potato | cytosol | 92.21 | 92.21 |
| PGSC0003DMT400038705 | Potato | cytosol | 77.27 | 89.47 |
| KRH50105 | Soybean | cytosol | 80.52 | 81.05 |
| KRH50107 | Soybean | cytosol | 79.87 | 80.39 |
| KRH42102 | Soybean | cytosol | 79.22 | 79.74 |
| KRH53964 | Soybean | cytosol | 76.62 | 78.67 |
| KRH42105 | Soybean | cytosol | 77.92 | 78.43 |
| KRH20397 | Soybean | cytosol | 77.92 | 77.92 |
| KRH20402 | Soybean | cytosol | 77.92 | 77.92 |
| KRH42103 | Soybean | cytosol | 77.27 | 77.78 |
| KRH50109 | Soybean | cytosol | 76.62 | 77.12 |
| KRH20400 | Soybean | cytosol | 76.62 | 76.62 |
| KRH50102 | Soybean | cytosol | 75.97 | 76.47 |
| KRH50104 | Soybean | endoplasmic reticulum | 79.87 | 76.4 |
| CDY51363 | Canola | cytosol | 75.32 | 76.32 |
| AT2G29500.1 | Thale cress | cytosol | 75.32 | 75.82 |
| CDX97881 | Canola | cytosol | 74.68 | 75.16 |
| KRH20403 | Soybean | cytosol | 78.57 | 75.16 |
| KRH20405 | Soybean | cytosol | 74.03 | 75.0 |
| AT1G07400.1 | Thale cress | cytosol | 75.32 | 73.89 |
| AT1G59860.1 | Thale cress | cytosol | 74.03 | 73.55 |
| CDY45448 | Canola | cytosol | 74.03 | 73.08 |
| CDY53371 | Canola | cytosol | 74.03 | 73.08 |
| KRH57663 | Soybean | cytosol | 64.29 | 72.79 |
| Bra018383.1-P | Field mustard | cytosol | 73.38 | 72.44 |
| KRH63973 | Soybean | cytosol | 66.23 | 72.34 |
| PGSC0003DMT400007587 | Potato | cytosol | 68.18 | 67.74 |
| PGSC0003DMT400030386 | Potato | cytosol | 68.18 | 66.88 |
| CDY53372 | Canola | cytosol, plastid | 66.88 | 66.45 |
| PGSC0003DMT400089913 | Potato | cytosol | 65.58 | 66.01 |
| PGSC0003DMT400030387 | Potato | cytosol | 65.58 | 65.58 |
| Bra018384.1-P | Field mustard | cytosol | 67.53 | 65.41 |
| Bra031725.1-P | Field mustard | cytosol | 67.53 | 65.41 |
| CDY45447 | Canola | cytosol | 66.88 | 64.78 |
| PGSC0003DMT400030382 | Potato | cytosol | 64.29 | 64.29 |
| PGSC0003DMT400030385 | Potato | cytosol | 66.23 | 62.2 |
| PGSC0003DMT400044066 | Potato | cytosol | 55.19 | 60.71 |
| PGSC0003DMT400030381 | Potato | mitochondrion | 48.05 | 60.16 |
| PGSC0003DMT400032851 | Potato | cytosol | 46.75 | 51.06 |
| PGSC0003DMT400088908 | Potato | cytosol | 33.77 | 50.0 |
| PGSC0003DMT400079950 | Potato | cytosol | 44.81 | 40.83 |
| PGSC0003DMT400060736 | Potato | mitochondrion | 36.36 | 38.62 |
| PGSC0003DMT400062882 | Potato | endoplasmic reticulum, golgi | 43.51 | 35.08 |
| PGSC0003DMT400023932 | Potato | endoplasmic reticulum | 44.81 | 35.03 |
| PGSC0003DMT400030603 | Potato | cytosol | 42.86 | 34.2 |
| PGSC0003DMT400053402 | Potato | endoplasmic reticulum, extracellular | 42.21 | 34.03 |
| PGSC0003DMT400049226 | Potato | cytosol | 42.21 | 33.33 |
| PGSC0003DMT400049225 | Potato | mitochondrion | 45.45 | 29.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078202 | EnsemblPlantsGene:PGSC0003DMG400030427 | EntrezGene:102605762 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 |
| InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF190 | PFAM:PF00011 |
| PFscan:PS01031 | PGSC:PGSC0003DMG400030427 | RefSeq:XP_006350801.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI000294EB57 |
| UniProt:M1CZL6 | MapMan:19.1.8.1 | : | : | : | : |
Description
Hsp20.1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030427]
Coordinates
chr6:-:56896895..56897612
Molecular Weight (calculated)
17689.9 Da
IEP (calculated)
5.422
GRAVY (calculated)
-0.775
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIPRIFGD RRSSSMFDPF SIDVFDPFRE LGFPGTNSGE TSAFANTRID WKETPEGHVF KADLPGLKKE EVKVEIEEDR VLQISGERNV EKEDKNDTWH
101: RVERSSGKFM RRFRLPENAK MDQVKASMEN EVLTVTVPKE QVKKPDVKSI EISG
101: RVERSSGKFM RRFRLPENAK MDQVKASMEN EVLTVTVPKE QVKKPDVKSI EISG
001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG
Arabidopsis Description
HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.