Factsheet for PGSC0003DMT400007587

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089913	Potato	cytosol	90.97	92.16
PGSC0003DMT400030387	Potato	cytosol	87.74	88.31
PGSC0003DMT400030386	Potato	cytosol	89.03	87.9
PGSC0003DMT400030382	Potato	cytosol	83.87	84.42
PGSC0003DMT400030385	Potato	cytosol	88.39	83.54
VIT_13s0019g03090.t01	Wine grape	cytosol	78.71	76.25
PGSC0003DMT400030381	Potato	mitochondrion	60.0	75.61
VIT_13s0019g03030.t01	Wine grape	cytosol	52.26	75.0
VIT_13s0019g03160.t01	Wine grape	cytosol	76.77	74.38
VIT_13s0019g02900.t01	Wine grape	cytosol	51.61	74.07
PGSC0003DMT400078201	Potato	cytosol	70.97	71.43
GSMUA_Achr9P00510_001	Banana	cytosol	72.26	71.34
VIT_13s0019g02920.t01	Wine grape	cytosol	62.58	71.32
PGSC0003DMT400078008	Potato	cytosol	69.68	70.13
GSMUA_Achr1P21160_001	Banana	cytosol	70.32	69.87
PGSC0003DMT400078202	Potato	cytosol	67.74	68.18
PGSC0003DMT400078006	Potato	cytosol	67.74	68.18
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	63.23	68.06
PGSC0003DMT400088908	Potato	cytosol	45.16	67.31
PGSC0003DMT400078007	Potato	cytosol	66.45	66.88
PGSC0003DMT400038705	Potato	cytosol	56.13	65.41
GSMUA_Achr5P17640_001	Banana	cytosol	35.48	61.8
PGSC0003DMT400044066	Potato	cytosol	52.9	58.57
VIT_13s0019g03050.t01	Wine grape	cytosol	60.65	56.97
TraesCS4B01G211700.1	Wheat	cytosol	43.23	54.03
PGSC0003DMT400032851	Potato	cytosol	45.16	49.65
PGSC0003DMT400079950	Potato	cytosol	51.61	47.34
PGSC0003DMT400060736	Potato	mitochondrion	38.06	40.69
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	46.45	37.7
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	45.81	37.17
PGSC0003DMT400030603	Potato	cytosol	43.87	35.23
PGSC0003DMT400023932	Potato	endoplasmic reticulum	42.58	33.5
PGSC0003DMT400049226	Potato	cytosol	40.65	32.31
PGSC0003DMT400049225	Potato	mitochondrion	41.29	27.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400007587	EnsemblPlantsGene:PGSC0003DMG400002928	EntrezGene:102606179	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400002928	RefSeq:XP_006345249.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00029644BE
UniProt:M0ZT86	MapMan:19.1.8.1	:	:	:	:

Description

Small molecular heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002928]

Coordinates

chr12:-:3139670..3140616

Molecular Weight (calculated)

17713.1 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.655

Length

155 amino acids

Sequence
(BLAST)

001: MSLIPTFFGG RRSNIFDPFS LDIWDPLEGF PIANPPSSVN ETSVFANAKI DWKETPEAHV FKVDVPGIKK EEVKVEVEEG RILQISGERS KEQEEKNDQW
101: HRMERSSGKF VRRFRLPENV KMEEIKAAME NGVLTVTVPK EEEKKPEVKA IDISG

Best Arabidopsis Sequence Match ( AT3G46230.1 )
(BLAST)

001: MSLVPSFFGG RRTNVFDPFS LDVWDPFEGF LTPGLTNAPA KDVAAFTNAK VDWRETPEAH VFKADVPGLK KEEVKVEVED GNILQISGER SSENEEKSDT
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG

Arabidopsis Description

HSP17.4A17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.