Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030387 | Potato | cytosol | 92.07 | 98.05 |
| PGSC0003DMT400030382 | Potato | cytosol | 87.8 | 93.51 |
| PGSC0003DMT400030386 | Potato | cytosol | 89.02 | 92.99 |
| Solyc09g015020.1.1 | Tomato | cytosol, nucleus | 87.2 | 92.86 |
| PGSC0003DMT400007587 | Potato | cytosol | 83.54 | 88.39 |
| PGSC0003DMT400089913 | Potato | cytosol | 78.05 | 83.66 |
| PGSC0003DMT400030381 | Potato | mitochondrion | 59.15 | 78.86 |
| VIT_13s0019g03030.t01 | Wine grape | cytosol | 49.39 | 75.0 |
| VIT_13s0019g03090.t01 | Wine grape | cytosol | 72.56 | 74.38 |
| VIT_13s0019g02900.t01 | Wine grape | cytosol | 48.78 | 74.07 |
| PGSC0003DMT400088908 | Potato | cytosol | 46.95 | 74.04 |
| VIT_13s0019g03160.t01 | Wine grape | cytosol | 71.34 | 73.12 |
| VIT_13s0019g02920.t01 | Wine grape | cytosol | 59.15 | 71.32 |
| GSMUA_Achr9P00510_001 | Banana | cytosol | 67.07 | 70.06 |
| PGSC0003DMT400078201 | Potato | cytosol | 65.24 | 69.48 |
| PGSC0003DMT400078008 | Potato | cytosol | 64.02 | 68.18 |
| GSMUA_Achr1P21160_001 | Banana | cytosol | 64.63 | 67.95 |
| VIT_13s0019g03010.t01 | Wine grape | cytosol, mitochondrion | 58.54 | 66.67 |
| PGSC0003DMT400078202 | Potato | cytosol | 62.2 | 66.23 |
| PGSC0003DMT400078006 | Potato | cytosol | 62.2 | 66.23 |
| PGSC0003DMT400078007 | Potato | cytosol | 61.59 | 65.58 |
| PGSC0003DMT400038705 | Potato | cytosol | 51.83 | 63.91 |
| GSMUA_Achr5P17640_001 | Banana | cytosol | 33.54 | 61.8 |
| PGSC0003DMT400044066 | Potato | cytosol | 48.78 | 57.14 |
| VIT_13s0019g03050.t01 | Wine grape | cytosol | 56.1 | 55.76 |
| TraesCS4B01G211700.1 | Wheat | cytosol | 40.24 | 53.23 |
| PGSC0003DMT400032851 | Potato | cytosol | 41.46 | 48.23 |
| PGSC0003DMT400079950 | Potato | cytosol | 46.34 | 44.97 |
| PGSC0003DMT400060736 | Potato | mitochondrion | 35.98 | 40.69 |
| PGSC0003DMT400062882 | Potato | endoplasmic reticulum, golgi | 43.29 | 37.17 |
| PGSC0003DMT400053402 | Potato | endoplasmic reticulum, extracellular | 43.29 | 37.17 |
| PGSC0003DMT400030603 | Potato | cytosol | 41.46 | 35.23 |
| PGSC0003DMT400049226 | Potato | cytosol | 39.02 | 32.82 |
| PGSC0003DMT400023932 | Potato | endoplasmic reticulum | 38.41 | 31.98 |
| PGSC0003DMT400049225 | Potato | mitochondrion | 40.24 | 28.21 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400030385 | EnsemblPlantsGene:PGSC0003DMG400011630 | EntrezGene:102588416 | EntrezGene:102589078 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom |
| InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF241 |
| PFAM:PF00011 | PFscan:PS01031 | PGSC:PGSC0003DMG400011630 | RefSeq:XP_006360819.1 | RefSeq:XP_006360821.1 | SEG:seg |
| SUPFAM:SSF49764 | UniParc:UPI000296A2C6 | UniProt:M1AU53 | MapMan:19.1.8.1 | : | : |
Description
Chloroplast small heat shock protein class I [Source:PGSC_GENE;Acc:PGSC0003DMG400011630]
Coordinates
chr9:-:11675983..11676827
Molecular Weight (calculated)
18765.2 Da
IEP (calculated)
6.541
GRAVY (calculated)
-0.827
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIPSFFGG RKSNIFDPFS LDLWDPFPIS TNAPSSAREV SAFANAKIDW KETPEAHVFK VDVPGIKKEE VKVEVEEGRI LQISGERSRE QEEKNDQWHR
101: MERSSGKFIR RFRLPENTKT GEIKAAMENG VLTVTVPKEE EKKHEVKAKE EEKKHEVKAI DISG
101: MERSSGKFIR RFRLPENTKT GEIKAAMENG VLTVTVPKEE EKKHEVKAKE EEKKHEVKAI DISG
001: MSLVPSFFGG RRTNVFDPFS LDVWDPFEGF LTPGLTNAPA KDVAAFTNAK VDWRETPEAH VFKADVPGLK KEEVKVEVED GNILQISGER SSENEEKSDT
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG
101: WHRVERSSGK FMRRFRLPEN AKVEEVKASM ENGVLSVTVP KVQESKPEVK SVDISG
Arabidopsis Description
HSP17.4A17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.