Factsheet for PGSC0003DMT400079950

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072250.2.1	Tomato	cytosol	85.21	88.34
KRH70223	Soybean	cytosol, nucleus	56.21	62.09
VIT_18s0001g01570.t01	Wine grape	mitochondrion	59.76	61.96
VIT_18s0001g01610.t01	Wine grape	cytosol	56.8	60.38
TraesCS7B01G088700.1	Wheat	cytosol	50.89	54.43
TraesCS7B01G088600.1	Wheat	cytosol	50.3	53.8
TraesCS7D01G185500.1	Wheat	cytosol	50.89	53.75
PGSC0003DMT400007587	Potato	cytosol	47.34	51.61
TraesCS7A01G183800.1	Wheat	cytosol	45.56	49.68
TraesCS7D01G185600.1	Wheat	cytosol	40.24	49.28
PGSC0003DMT400030386	Potato	cytosol	45.56	49.04
PGSC0003DMT400030387	Potato	cytosol	44.38	48.7
PGSC0003DMT400030382	Potato	cytosol	43.79	48.05
PGSC0003DMT400038705	Potato	cytosol	37.28	47.37
PGSC0003DMT400089913	Potato	cytosol	42.6	47.06
PGSC0003DMT400078006	Potato	cytosol	42.6	46.75
PGSC0003DMT400078008	Potato	cytosol	42.6	46.75
PGSC0003DMT400078201	Potato	cytosol	42.6	46.75
PGSC0003DMT400030385	Potato	cytosol	44.97	46.34
PGSC0003DMT400078007	Potato	cytosol	42.01	46.1
PGSC0003DMT400078202	Potato	cytosol	40.83	44.81
PGSC0003DMT400030381	Potato	mitochondrion	32.54	44.72
PGSC0003DMT400032851	Potato	cytosol	34.32	41.13
PGSC0003DMT400044066	Potato	cytosol	33.73	40.71
PGSC0003DMT400088908	Potato	cytosol	23.08	37.5
PGSC0003DMT400060736	Potato	mitochondrion	31.36	36.55
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	35.5	31.41
PGSC0003DMT400030603	Potato	cytosol	35.5	31.09
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	33.73	29.84
PGSC0003DMT400023932	Potato	endoplasmic reticulum	32.54	27.92
PGSC0003DMT400049226	Potato	cytosol	28.4	24.62
PGSC0003DMT400049225	Potato	mitochondrion	30.18	21.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400079950	EnsemblPlantsGene:PGSC0003DMG400031133	EntrezGene:107062932	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF133	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400031133	RefSeq:XP_015169690.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000295F367
UniProt:M1D2S0	MapMan:35.1	:	:	:	:

Description

Heat-shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031133]

Coordinates

chr4:-:61728105..61729376

Molecular Weight (calculated)

18647.0 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.535

Length

169 amino acids

Sequence
(BLAST)

001: MASSIGPWLG GGRRTDMGFV SPISSDLWDP LGLGFGGELG FGSGLGFRRG GDDDVSALAH ASVDWRETDQ AHIFRVDIPG VKKEDLKVQI EDDNILEISG
101: ERVKEEEKGD DKWHRVERRR GSFCRKFRLP ENVNVEGISC GLENGVLTVN VPKKETQQIP KNVKSIDIA

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.