Factsheet for PGSC0003DMT400044066

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75757	Soybean	cytosol	62.86	61.11
PGSC0003DMT400078008	Potato	cytosol	62.86	57.14
PGSC0003DMT400038705	Potato	cytosol	54.29	57.14
PGSC0003DMT400078006	Potato	cytosol	62.14	56.49
PGSC0003DMT400078201	Potato	cytosol	61.43	55.84
PGSC0003DMT400078202	Potato	cytosol	60.71	55.19
PGSC0003DMT400078007	Potato	cytosol	60.71	55.19
VIT_06s0004g05770.t01	Wine grape	cytosol	56.43	54.86
PGSC0003DMT400089913	Potato	cytosol	58.57	53.59
PGSC0003DMT400007587	Potato	cytosol	58.57	52.9
PGSC0003DMT400030387	Potato	cytosol	56.43	51.3
PGSC0003DMT400030382	Potato	cytosol	56.43	51.3
PGSC0003DMT400030381	Potato	mitochondrion	45.0	51.22
PGSC0003DMT400030386	Potato	cytosol	56.43	50.32
PGSC0003DMT400030385	Potato	cytosol	57.14	48.78
PGSC0003DMT400032851	Potato	cytosol	46.43	46.1
PGSC0003DMT400088908	Potato	cytosol	28.57	38.46
PGSC0003DMT400079950	Potato	cytosol	40.71	33.73
PGSC0003DMT400060736	Potato	mitochondrion	33.57	32.41
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	41.43	30.37
PGSC0003DMT400023932	Potato	endoplasmic reticulum	42.14	29.95
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	40.71	29.84
PGSC0003DMT400049226	Potato	cytosol	35.71	25.64
PGSC0003DMT400030603	Potato	cytosol	34.29	24.87
PGSC0003DMT400049225	Potato	mitochondrion	35.0	20.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400044066	EnsemblPlantsGene:PGSC0003DMG400017098	EntrezGene:102582967	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400017098	RefSeq:XP_006367002.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00029651D1
UniProt:M1BFJ7	MapMan:35.1	:	:	:	:

Description

Hsp20.1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017098]

Coordinates

chr9:-:31745004..31745667

Molecular Weight (calculated)

16226.5 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.709

Length

140 amino acids

Sequence
(BLAST)

001: MALIPQLLES IFQPLSLNDS STSKFVNPRV DWKENEDAHV FKVDLPGLNK EEIKVEIEEG KVLQISGEIK GVDLNKEDQK KENETWRRVE RPRGKFCRRF
101: WLPENAKIDE VKASMENGVL TLTIPKQEIK KPEVKTIEIN

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.