Factsheet for PGSC0003DMT400089913

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007587	Potato	cytosol	92.16	90.97
PGSC0003DMT400030386	Potato	cytosol	84.31	82.17
PGSC0003DMT400030387	Potato	cytosol	82.35	81.82
PGSC0003DMT400030382	Potato	cytosol	79.08	78.57
PGSC0003DMT400030385	Potato	cytosol	83.66	78.05
VIT_13s0019g02900.t01	Wine grape	cytosol	52.29	74.07
VIT_13s0019g03030.t01	Wine grape	cytosol	52.29	74.07
VIT_13s0019g03090.t01	Wine grape	cytosol	77.12	73.75
PGSC0003DMT400030381	Potato	mitochondrion	58.17	72.36
VIT_13s0019g03160.t01	Wine grape	cytosol	73.86	70.62
VIT_13s0019g02920.t01	Wine grape	cytosol	62.75	70.59
PGSC0003DMT400078201	Potato	cytosol	68.63	68.18
PGSC0003DMT400078008	Potato	cytosol	67.97	67.53
GSMUA_Achr9P00510_001	Banana	cytosol	69.28	67.52
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	62.75	66.67
GSMUA_Achr1P21160_001	Banana	cytosol	67.97	66.67
PGSC0003DMT400078202	Potato	cytosol	66.01	65.58
PGSC0003DMT400078006	Potato	cytosol	66.01	65.58
PGSC0003DMT400038705	Potato	cytosol	56.21	64.66
PGSC0003DMT400078007	Potato	cytosol	64.71	64.29
PGSC0003DMT400088908	Potato	cytosol	43.14	63.46
GSMUA_Achr5P17640_001	Banana	cytosol	35.29	60.67
PGSC0003DMT400044066	Potato	cytosol	53.59	58.57
VIT_13s0019g03050.t01	Wine grape	cytosol	58.82	54.55
TraesCS4B01G211700.1	Wheat	cytosol	41.18	50.81
PGSC0003DMT400032851	Potato	cytosol	44.44	48.23
PGSC0003DMT400079950	Potato	cytosol	47.06	42.6
PGSC0003DMT400060736	Potato	mitochondrion	38.56	40.69
PGSC0003DMT400053402	Potato	endoplasmic reticulum, extracellular	45.75	36.65
PGSC0003DMT400062882	Potato	endoplasmic reticulum, golgi	43.79	35.08
PGSC0003DMT400023932	Potato	endoplasmic reticulum	43.79	34.01
PGSC0003DMT400030603	Potato	cytosol	42.48	33.68
PGSC0003DMT400049226	Potato	cytosol	39.87	31.28
PGSC0003DMT400049225	Potato	mitochondrion	39.87	26.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400089913	EnsemblPlantsGene:PGSC0003DMG400039484	EntrezGene:102578188	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400039484	RefSeq:XP_006345250.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00029645E0
UniProt:M1DJ69	MapMan:19.1.8.1	:	:	:	:

Description

Low molecular weight heat-shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039484]

Coordinates

chr12:+:3142147..3142608

Molecular Weight (calculated)

17336.7 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.571

Length

153 amino acids

Sequence
(BLAST)

001: MSLIPTFFGR SNIVDPLSLH IGDPFEGFPI ANPSSSVRET SVFANARIDW KETPEAHVFK VDVPGIKKEE VKVEVEEGRI LQISGERSKE QEEKNDQWHC
101: MERSSGKFIR RFKLPENVKM EEIKAAMENG VLTVTVPKEE EKKPEVKAIN ISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.