Factsheet for VIT_13s0019g03010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02920.t01	Wine grape	cytosol	89.58	94.85
VIT_13s0019g03030.t01	Wine grape	cytosol	67.36	89.81
VIT_13s0019g02900.t01	Wine grape	cytosol	64.58	86.11
VIT_08s0058g00210.t01	Wine grape	cytosol	70.14	68.24
VIT_13s0019g03090.t01	Wine grape	cytosol	74.31	66.88
VIT_13s0019g03000.t01	Wine grape	cytosol	74.31	66.88
VIT_13s0019g02930.t01	Wine grape	cytosol	74.31	66.88
VIT_13s0019g02760.t01	Wine grape	cytosol	63.19	65.0
VIT_13s0019g03160.t01	Wine grape	cytosol	70.83	63.75
PGSC0003DMT400007587	Potato	cytosol	68.06	63.23
VIT_06s0004g05770.t01	Wine grape	cytosol	63.19	63.19
PGSC0003DMT400089913	Potato	cytosol	66.67	62.75
PGSC0003DMT400030381	Potato	mitochondrion	53.47	62.6
PGSC0003DMT400030387	Potato	cytosol	66.67	62.34
VIT_13s0019g02850.t01	Wine grape	cytosol	65.28	62.25
VIT_13s0019g02820.t01	Wine grape	cytosol	65.28	62.25
VIT_13s0019g02780.t01	Wine grape	cytosol	65.28	62.25
VIT_13s0019g02770.t01	Wine grape	cytosol	65.28	62.25
PGSC0003DMT400030386	Potato	cytosol	67.36	61.78
PGSC0003DMT400030382	Potato	cytosol	65.97	61.69
VIT_13s0019g02840.t01	Wine grape	cytosol	64.58	61.59
VIT_13s0019g02740.t01	Wine grape	cytosol	63.89	60.93
Solyc09g015020.1.1	Tomato	cytosol, nucleus	63.89	59.74
PGSC0003DMT400030385	Potato	cytosol	66.67	58.54
Solyc09g015000.2.1	Tomato	cytosol	54.17	58.21
VIT_13s0019g03050.t01	Wine grape	cytosol	65.28	56.97
VIT_13s0019g03170.t01	Wine grape	cytosol	61.81	55.97
PGSC0003DMT400088908	Potato	cytosol	34.03	47.12
TraesCS4B01G211700.1	Wheat	cytosol	36.11	41.94
VIT_19s0085g01050.t01	Wine grape	cytosol	42.36	41.78
VIT_18s0001g01570.t01	Wine grape	mitochondrion	44.44	39.26
VIT_18s0001g01610.t01	Wine grape	cytosol	40.97	37.11
VIT_13s0019g00860.t01	Wine grape	cytosol	34.03	34.51
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	43.06	33.33
VIT_12s0035g01910.t01	Wine grape	cytosol	43.06	24.8

Protein Annotations

MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	EMBL:AM434665	ProteinID:CAN73759	ProteinID:CAN73759.1
ProteinID:CCB56260	ProteinID:CCB56260.1	UniProt:F6HNP1	EMBL:FN595998	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241
SUPFAM:SSF49764	UniParc:UPI000210AA4A	ArrayExpress:VIT_13s0019g03010	EnsemblPlantsGene:VIT_13s0019g03010	EnsemblPlants:VIT_13s0019g03010.t01	SEG:seg

Description

No Description!

Coordinates

chr13:+:4151427..4155706

Molecular Weight (calculated)

16374.6 Da

IEP (calculated)

9.937

GRAVY (calculated)

-0.785

Length

144 amino acids

Sequence
(BLAST)

001: MNRRMQKRPA RTKGFPFNAT LSNIPSTVGE TSAFANTRVD WKETLVAHVF KADLPGLKKE EVKVEVEEGR VLQISGERSK EQEEKNDKWH RMDRSSGKFL
101: CRFRLPEDAK TDEVKASIEN GVLTMTIPKE EVKKAEVKAI EISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.