Factsheet for VIT_19s0085g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02900.t01	Wine grape	cytosol	40.41	54.63
VIT_13s0019g03030.t01	Wine grape	cytosol	40.41	54.63
KRH13798	Soybean	cytosol	53.42	46.43
VIT_06s0004g05770.t01	Wine grape	cytosol	45.21	45.83
VIT_13s0019g02760.t01	Wine grape	cytosol	43.84	45.71
VIT_13s0019g02920.t01	Wine grape	cytosol	42.47	45.59
VIT_08s0058g00210.t01	Wine grape	cytosol	45.89	45.27
VIT_13s0019g02850.t01	Wine grape	cytosol	44.52	43.05
VIT_13s0019g02840.t01	Wine grape	cytosol	44.52	43.05
VIT_13s0019g02820.t01	Wine grape	cytosol	44.52	43.05
VIT_13s0019g02770.t01	Wine grape	cytosol	44.52	43.05
VIT_13s0019g03170.t01	Wine grape	cytosol	46.58	42.77
VIT_13s0019g03090.t01	Wine grape	cytosol	46.58	42.5
VIT_13s0019g02740.t01	Wine grape	cytosol	43.84	42.38
VIT_13s0019g02780.t01	Wine grape	cytosol	43.84	42.38
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	41.78	42.36
VIT_13s0019g02930.t01	Wine grape	cytosol	45.89	41.88
VIT_13s0019g03000.t01	Wine grape	cytosol	45.21	41.25
Zm00001d039942_P001	Maize	cytosol	41.78	40.94
EES02535	Sorghum	cytosol	41.78	40.67
TraesCS3B01G048600.1	Wheat	cytosol	42.47	40.26
GSMUA_Achr1P21150_001	Banana	cytosol	44.52	40.12
VIT_13s0019g03160.t01	Wine grape	cytosol	43.15	39.38
TraesCS3D01G044400.1	Wheat	cytosol	41.78	39.35
Os01t0135800-01	Rice	cytosol	40.41	39.33
VIT_13s0019g03050.t01	Wine grape	cytosol	41.1	36.36
VIT_13s0019g00860.t01	Wine grape	cytosol	34.93	35.92
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	39.73	31.18
VIT_18s0001g01610.t01	Wine grape	cytosol	33.56	30.82
VIT_18s0001g01570.t01	Wine grape	mitochondrion	34.25	30.67
VIT_12s0035g01910.t01	Wine grape	cytosol	36.99	21.6

Protein Annotations

EntrezGene:100263791	wikigene:100263791	Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	UniProt:A5AND9
EMBL:AM430724	ProteinID:CAN60434	ProteinID:CAN60434.1	ProteinID:CCB48966	ProteinID:CCB48966.1	EMBL:FN595503
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	EntrezGene:LOC100263791	wikigene:LOC100263791	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF174	SUPFAM:SSF49764	TIGR:TC53553	TIGR:TC54060	UniParc:UPI000151EF53
ArrayExpress:VIT_19s0085g01050	EnsemblPlantsGene:VIT_19s0085g01050	EnsemblPlants:VIT_19s0085g01050.t01	unigene:Vvi.7869	RefSeq:XP_002267955	RefSeq:XP_002267955.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:23631036..23631743

Molecular Weight (calculated)

16446.7 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.530

Length

146 amino acids

Sequence
(BLAST)

001: MSMLSSLFEN LGIASSGYVH MDWKETPQAH IFQVDLPGLT KNEVKLEVHQ GRVLHISGCR EEEPEEKGEK WHCRERSCGS FSRQFRLPED AKVEEIKASM
101: HDGVLIVTVP KDEALMKHSQ KNMVEISGDD EAHAPKGLGR FVCCKA

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.