Factsheet for VIT_06s0004g05770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03030.t01	Wine grape	cytosol	57.64	76.85
VIT_13s0019g02900.t01	Wine grape	cytosol	56.25	75.0
VIT_13s0019g02760.t01	Wine grape	cytosol	68.06	70.0
VIT_13s0019g02850.t01	Wine grape	cytosol	72.92	69.54
KRH75757	Soybean	cytosol	69.44	69.44
VIT_13s0019g02770.t01	Wine grape	cytosol	72.22	68.87
VIT_13s0019g02780.t01	Wine grape	cytosol	72.22	68.87
VIT_13s0019g02820.t01	Wine grape	cytosol	71.53	68.21
VIT_13s0019g02840.t01	Wine grape	cytosol	71.53	68.21
VIT_13s0019g02740.t01	Wine grape	cytosol	71.53	68.21
VIT_13s0019g02920.t01	Wine grape	cytosol	63.89	67.65
VIT_13s0019g03000.t01	Wine grape	cytosol	75.0	67.5
VIT_08s0058g00210.t01	Wine grape	cytosol	68.75	66.89
VIT_13s0019g02930.t01	Wine grape	cytosol	74.31	66.88
VIT_13s0019g03090.t01	Wine grape	cytosol	72.92	65.62
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	63.19	63.19
VIT_13s0019g03160.t01	Wine grape	cytosol	68.75	61.88
VIT_13s0019g03170.t01	Wine grape	cytosol	66.67	60.38
PGSC0003DMT400044066	Potato	cytosol	54.86	56.43
VIT_13s0019g03050.t01	Wine grape	cytosol	62.5	54.55
VIT_19s0085g01050.t01	Wine grape	cytosol	45.83	45.21
VIT_18s0001g01610.t01	Wine grape	cytosol	49.31	44.65
VIT_18s0001g01570.t01	Wine grape	mitochondrion	50.0	44.17
VIT_13s0019g00860.t01	Wine grape	cytosol	40.97	41.55
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	45.83	35.48
VIT_12s0035g01910.t01	Wine grape	cytosol	45.83	26.4

Protein Annotations

EntrezGene:100262206	wikigene:100262206	MapMan:19.1.8.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CCB43519
ProteinID:CCB43519.1	UniProt:F6GUW1	EMBL:FN594951	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100262206	wikigene:LOC100262206	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF241	SUPFAM:SSF49764	TIGR:TC54666	UniParc:UPI00015C7ED8	ArrayExpress:VIT_06s0004g05770	EnsemblPlantsGene:VIT_06s0004g05770
EnsemblPlants:VIT_06s0004g05770.t01	unigene:Vvi.24813	unigene:Vvi.4464	RefSeq:XP_002281506	RefSeq:XP_002281506.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:6524201..6524870

Molecular Weight (calculated)

16311.5 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.642

Length

144 amino acids

Sequence
(BLAST)

001: MALIPRFFGN PSVSDPFPRE MWDPLFGSGE ASSLANLQID WKETPEAHVF KADLPGLKKE EVKVEVEEGR VLKISGERSM EKEDKNDKWH RVERSHGKFL
101: RSFRLPENAK VDAVKAAMEN GVLTVTVPKK EVKKHEVKSI EISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.