Factsheet for VIT_13s0019g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02900.t01	Wine grape	cytosol	92.59	92.59
VIT_13s0019g02920.t01	Wine grape	cytosol	87.96	69.85
VIT_13s0019g03010.t01	Wine grape	cytosol, mitochondrion	89.81	67.36
PGSC0003DMT400030381	Potato	mitochondrion	68.52	60.16
VIT_08s0058g00210.t01	Wine grape	cytosol	79.63	58.11
VIT_06s0004g05770.t01	Wine grape	cytosol	76.85	57.64
VIT_13s0019g02760.t01	Wine grape	cytosol	74.07	57.14
VIT_13s0019g03090.t01	Wine grape	cytosol	83.33	56.25
VIT_13s0019g03000.t01	Wine grape	cytosol	82.41	55.62
VIT_13s0019g02930.t01	Wine grape	cytosol	82.41	55.62
VIT_13s0019g02850.t01	Wine grape	cytosol	75.0	53.64
VIT_13s0019g02780.t01	Wine grape	cytosol	75.0	53.64
VIT_13s0019g02770.t01	Wine grape	cytosol	74.07	52.98
VIT_13s0019g02820.t01	Wine grape	cytosol	74.07	52.98
PGSC0003DMT400030387	Potato	cytosol	75.0	52.6
VIT_13s0019g02840.t01	Wine grape	cytosol	73.15	52.32
PGSC0003DMT400089913	Potato	cytosol	74.07	52.29
PGSC0003DMT400007587	Potato	cytosol	75.0	52.26
VIT_13s0019g03160.t01	Wine grape	cytosol	76.85	51.88
VIT_13s0019g02740.t01	Wine grape	cytosol	72.22	51.66
PGSC0003DMT400030386	Potato	cytosol	75.0	51.59
Solyc09g015020.1.1	Tomato	cytosol, nucleus	73.15	51.3
PGSC0003DMT400030382	Potato	cytosol	73.15	51.3
VIT_13s0019g03050.t01	Wine grape	cytosol	77.78	50.91
PGSC0003DMT400030385	Potato	cytosol	75.0	49.39
VIT_13s0019g03170.t01	Wine grape	cytosol	70.37	47.8
Solyc09g015000.2.1	Tomato	cytosol	59.26	47.76
VIT_19s0085g01050.t01	Wine grape	cytosol	54.63	40.41
PGSC0003DMT400088908	Potato	cytosol	35.19	36.54
VIT_18s0001g01570.t01	Wine grape	mitochondrion	53.7	35.58
VIT_18s0001g01610.t01	Wine grape	cytosol	50.0	33.96
VIT_13s0019g00860.t01	Wine grape	cytosol	44.44	33.8
VIT_18s0089g01270.t01	Wine grape	endoplasmic reticulum	51.85	30.11
TraesCS4B01G211700.1	Wheat	cytosol	34.26	29.84
VIT_12s0035g01910.t01	Wine grape	cytosol	48.15	20.8

Protein Annotations

ArrayExpress:VIT_13s0019g03030	EMBL:FN595998	EnsemblPlants:VIT_13s0019g03030.t01	EnsemblPlantsGene:VIT_13s0019g03030	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241
PFAM:PF00011	PFscan:PS01031	ProteinID:CCB56258	ProteinID:CCB56258.1	SEG:seg	SUPFAM:SSF49764
UniParc:UPI00015CA256	UniProt:F6HNN9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr13:+:4164808..4165285

Molecular Weight (calculated)

12672.3 Da

IEP (calculated)

7.524

GRAVY (calculated)

-0.817

Length

108 amino acids

Sequence
(BLAST)

001: MRVDWKETLV AHVFKADLPG LKKEEVKVEV EEGRVLQINR ERSKEQEEKN DKWHRMERSN GKFLCRFRLL EDAKTDEVKA SMENGMLTVT VPKEEVKKAE
101: VKAIEIFG

Best Arabidopsis Sequence Match ( AT1G53540.1 )
(BLAST)

001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG

Arabidopsis Description

HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.