Factsheet for Bra018383.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53371	Canola	cytosol	98.08	98.08
CDY45448	Canola	cytosol	98.08	98.08
CDY51363	Canola	cytosol	90.38	92.76
AT2G29500.1	Thale cress	cytosol	89.74	91.5
CDX97881	Canola	cytosol	89.74	91.5
Bra018384.1-P	Field mustard	cytosol	88.46	86.79
Bra031725.1-P	Field mustard	cytosol	88.46	86.79
KRH42102	Soybean	cytosol	77.56	79.08
KRH42105	Soybean	cytosol	76.92	78.43
KRH53964	Soybean	cytosol	74.36	77.33
KRH50105	Soybean	cytosol	75.64	77.12
KRH42103	Soybean	cytosol	75.64	77.12
KRH20402	Soybean	cytosol	75.64	76.62
KRH50107	Soybean	cytosol	75.0	76.47
PGSC0003DMT400078008	Potato	cytosol	75.0	75.97
KRH20397	Soybean	cytosol	75.0	75.97
Solyc06g076570.1.1	Tomato	cytosol, extracellular, nucleus	74.36	75.32
KRH50102	Soybean	cytosol	73.72	75.16
KRH50104	Soybean	endoplasmic reticulum	77.56	75.16
Solyc06g076540.1.1	Tomato	cytosol, nucleus	73.72	74.68
PGSC0003DMT400078006	Potato	cytosol	73.72	74.68
KRH20403	Soybean	cytosol	76.92	74.53
KRH50109	Soybean	cytosol	73.08	74.51
KRH20400	Soybean	cytosol	73.08	74.03
KRH63973	Soybean	cytosol	66.67	73.76
Solyc06g076560.1.1	Tomato	cytosol, nucleus	72.44	73.38
PGSC0003DMT400078007	Potato	cytosol	72.44	73.38
PGSC0003DMT400078202	Potato	cytosol	72.44	73.38
Solyc09g059210.1.1	Tomato	cytosol, nucleus	31.41	73.13
PGSC0003DMT400038705	Potato	cytosol	62.18	72.93
PGSC0003DMT400078201	Potato	cytosol	71.79	72.73
Solyc06g076520.1.1	Tomato	cytosol, nucleus, plastid	71.79	72.73
KRH20405	Soybean	cytosol	69.87	71.71
Bra020295.1-P	Field mustard	cytosol	67.95	69.74
Bra006697.1-P	Field mustard	cytosol	66.67	68.42
KRH15020	Soybean	cytosol	69.23	67.92
KRH57663	Soybean	cytosol	58.97	67.65
Bra002539.1-P	Field mustard	plastid	69.23	67.5
Bra018216.1-P	Field mustard	cytosol	66.67	66.24
Solyc07g045610.1.1	Tomato	cytosol	32.69	65.38
Bra028141.1-P	Field mustard	cytosol	39.1	43.88
Bra027999.1-P	Field mustard	extracellular	42.31	38.37
Bra000703.1-P	Field mustard	extracellular	42.31	33.5

Protein Annotations

EnsemblPlants:Bra018383.1	EnsemblPlants:Bra018383.1-P	EnsemblPlantsGene:Bra018383	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190	PFAM:PF00011
PFscan:PS01031	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0002547D63	UniProt:M4DPE2	MapMan:19.1.8.1

Description

AT2G29500 (E=1e-063) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI)

Coordinates

chrA05:+:7857312..7857782

Molecular Weight (calculated)

17748.9 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.713

Length

156 amino acids

Sequence
(BLAST)

001: MSMIPSFFGN NRRGGSSFVD PFSLDVWDPF KDFPSSSSFS RENSAIVNAR VDWRETPEAH VFKADLPGMK KEEVKVEIED DSVLKISGER HVEKEDKNDT
101: WHRVERSSGQ FTRKFRLPEN VKMDQVKAAM ENGVLTVTVP KAEMKKPDVK SIQISG

Best Arabidopsis Sequence Match ( AT2G29500.1 )
(BLAST)

001: MSMIPSFFNN NRRSNIFDPF SLDVWDPFKE LTSSSLSREN SAIVNARVDW RETPEAHVFK ADLPGLKKEE VKVEIEEDSV LKISGERHVE KEDKNDTWHR
101: VERSSGQFTR RFRLPENVKM DQVKAAMENG VLTVTVPKAE TKKADVKSIQ ISG

Arabidopsis Description

HSP17.6B17.6 kDa class I heat shock protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.