Factsheet for Solyc06g076520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07400.1	Solyc06g009750.2.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076560.1.1	Tomato	cytosol, nucleus	98.05	98.05
PGSC0003DMT400078201	Potato	cytosol	96.1	96.1
Solyc06g076540.1.1	Tomato	cytosol, nucleus	94.16	94.16
Solyc06g076570.1.1	Tomato	cytosol, extracellular, nucleus	91.56	91.56
KRH50105	Soybean	cytosol	79.87	80.39
Solyc09g059210.1.1	Tomato	cytosol, nucleus	34.42	79.1
KRH50107	Soybean	cytosol	78.57	79.08
KRH42102	Soybean	cytosol	78.57	79.08
KRH53964	Soybean	cytosol	76.62	78.67
KRH42105	Soybean	cytosol	77.27	77.78
KRH20397	Soybean	cytosol	76.62	76.62
KRH20402	Soybean	cytosol	76.62	76.62
KRH42103	Soybean	cytosol	75.97	76.47
KRH50102	Soybean	cytosol	75.32	75.82
KRH50109	Soybean	cytosol	75.32	75.82
CDY51363	Canola	cytosol	74.68	75.66
KRH20400	Soybean	cytosol	75.32	75.32
AT2G29500.1	Thale cress	cytosol	74.68	75.16
KRH50104	Soybean	endoplasmic reticulum	78.57	75.16
CDX97881	Canola	cytosol	74.03	74.51
KRH63973	Soybean	cytosol	68.18	74.47
KRH57663	Soybean	cytosol	65.58	74.26
KRH20403	Soybean	cytosol	77.27	73.91
KRH20405	Soybean	cytosol	72.73	73.68
AT1G59860.1	Thale cress	cytosol	74.03	73.55
AT1G07400.1	Thale cress	cytosol	74.68	73.25
Solyc09g015020.1.1	Tomato	cytosol, nucleus	72.73	72.73
CDY53371	Canola	cytosol	73.38	72.44
CDY45448	Canola	cytosol	73.38	72.44
Bra018383.1-P	Field mustard	cytosol	72.73	71.79
Solyc07g045610.1.1	Tomato	cytosol	35.71	70.51
Solyc09g015000.2.1	Tomato	cytosol	60.39	69.4
CDY53372	Canola	cytosol, plastid	68.18	67.74
Bra031725.1-P	Field mustard	cytosol	68.83	66.67
Bra018384.1-P	Field mustard	cytosol	68.83	66.67
CDY45447	Canola	cytosol	68.18	66.04
Solyc02g093600.2.1	Tomato	cytosol, plastid	44.81	50.74
Solyc04g072250.2.1	Tomato	cytosol	46.75	44.17
Solyc04g014480.2.1	Tomato	mitochondrion	37.66	40.0
Solyc03g113930.1.1	Tomato	endoplasmic reticulum	46.75	38.3
Solyc01g102960.2.1	Tomato	endoplasmic reticulum	43.51	35.45
Solyc09g011710.2.1	Tomato	cytosol	46.75	34.62
Solyc11g020330.1.1	Tomato	plastid	42.21	34.21
Solyc10g086680.1.1	Tomato	mitochondrion	43.51	28.63

Protein Annotations

EMBL:AF123255	EMBL:AY150040	EnsemblPlants:Solyc06g076520.1.1	EnsemblPlantsGene:Solyc06g076520.1	Gene3D:2.60.40.790	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190	PFAM:PF00011	PFscan:PS01031
SEG:seg	SUPFAM:SSF49764	UniParc:UPI00000AD08D	UniProt:Q9SYU8	MapMan:19.1.8.1	:

Description

17.7 kD class I small heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q9SYU8]

Coordinates

chr6:-:47546790..47547254

Molecular Weight (calculated)

17736.1 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.766

Length

154 amino acids

Sequence
(BLAST)

001: MSLIPRIFGD RRSSSMFDPF SIDVFDPFRE LGFPSTNSGE SSAFANTRID WKETPEAHVF KVDLPGLKKE EVKVEVEEDR VLQISGERNV EKEDKNDKWH
101: RMERSSGKFM RRFRLPENAK MDQVKASMEN GVLTVTVPKE EVKKPEVKSI EISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.