Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g009750.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07400.1 | Solyc06g009750.2.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g045610.1.1 | Tomato | cytosol | 65.67 | 56.41 |
| Solyc06g076540.1.1 | Tomato | cytosol, nucleus | 80.6 | 35.06 |
| Solyc06g076570.1.1 | Tomato | cytosol, extracellular, nucleus | 80.6 | 35.06 |
| Solyc06g076560.1.1 | Tomato | cytosol, nucleus | 79.1 | 34.42 |
| Solyc06g076520.1.1 | Tomato | cytosol, nucleus, plastid | 79.1 | 34.42 |
| CDY51363 | Canola | cytosol | 74.63 | 32.89 |
| AT2G29500.1 | Thale cress | cytosol | 74.63 | 32.68 |
| CDX97881 | Canola | cytosol | 74.63 | 32.68 |
| CDY53371 | Canola | cytosol | 73.13 | 31.41 |
| CDY45448 | Canola | cytosol | 73.13 | 31.41 |
| Bra018383.1-P | Field mustard | cytosol | 73.13 | 31.41 |
| AT1G59860.1 | Thale cress | cytosol | 70.15 | 30.32 |
| AT1G07400.1 | Thale cress | cytosol | 68.66 | 29.3 |
| KRH15020 | Soybean | cytosol | 68.66 | 28.93 |
| CDY53372 | Canola | cytosol, plastid | 65.67 | 28.39 |
| Solyc09g015020.1.1 | Tomato | cytosol, nucleus | 64.18 | 27.92 |
| CDY45447 | Canola | cytosol | 65.67 | 27.67 |
| Bra031725.1-P | Field mustard | cytosol | 65.67 | 27.67 |
| Bra018384.1-P | Field mustard | cytosol | 65.67 | 27.67 |
| Solyc09g015000.2.1 | Tomato | cytosol | 43.28 | 21.64 |
| Solyc02g093600.2.1 | Tomato | cytosol, plastid | 43.28 | 21.32 |
| Solyc04g072250.2.1 | Tomato | cytosol | 47.76 | 19.63 |
| Solyc03g113930.1.1 | Tomato | endoplasmic reticulum | 46.27 | 16.49 |
| Solyc01g102960.2.1 | Tomato | endoplasmic reticulum | 44.78 | 15.87 |
| Solyc04g014480.2.1 | Tomato | mitochondrion | 32.84 | 15.17 |
| Solyc11g020330.1.1 | Tomato | plastid | 40.3 | 14.21 |
| Solyc09g011710.2.1 | Tomato | cytosol | 38.81 | 12.5 |
| Solyc10g086680.1.1 | Tomato | mitochondrion | 40.3 | 11.54 |
Protein Annotations
| EnsemblPlants:Solyc09g059210.1.1 | EnsemblPlantsGene:Solyc09g059210.1 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF241 | PFAM:PF00011 | PFscan:PS01031 |
| SUPFAM:SSF49764 | UniParc:UPI000276B572 | UniProt:K4CTK7 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr9:-:53755532..53755735
Molecular Weight (calculated)
7807.1 Da
IEP (calculated)
4.400
GRAVY (calculated)
-0.994
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MYNSAFANTR VDWKETPEAH VFKSDLPGFK KEEVKMEIEE DKVLQISGER TMEKEDKNNV NSIEISD
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.