Factsheet for Solyc06g076570.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07400.1	Solyc06g009750.2.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078008	Potato	cytosol	98.7	98.7
Solyc06g076540.1.1	Tomato	cytosol, nucleus	94.16	94.16
Solyc06g076560.1.1	Tomato	cytosol, nucleus	92.86	92.86
Solyc06g076520.1.1	Tomato	cytosol, nucleus, plastid	91.56	91.56
KRH50105	Soybean	cytosol	83.12	83.66
KRH50107	Soybean	cytosol	82.47	83.01
KRH42102	Soybean	cytosol	81.82	82.35
KRH42105	Soybean	cytosol	80.52	81.05
KRH53964	Soybean	cytosol	78.57	80.67
Solyc09g059210.1.1	Tomato	cytosol, nucleus	35.06	80.6
KRH20402	Soybean	cytosol	80.52	80.52
KRH20397	Soybean	cytosol	80.52	80.52
KRH42103	Soybean	cytosol	79.87	80.39
KRH50109	Soybean	cytosol	79.22	79.74
KRH20400	Soybean	cytosol	79.22	79.22
KRH50102	Soybean	cytosol	78.57	79.08
AT2G29500.1	Thale cress	cytosol	77.27	77.78
KRH50104	Soybean	endoplasmic reticulum	81.17	77.64
KRH20405	Soybean	cytosol	76.62	77.63
CDY51363	Canola	cytosol	75.97	76.97
Solyc07g045610.1.1	Tomato	cytosol	38.96	76.92
KRH20403	Soybean	cytosol	79.87	76.4
CDX97881	Canola	cytosol	75.32	75.82
KRH57663	Soybean	cytosol	66.88	75.74
KRH63973	Soybean	cytosol	68.83	75.18
AT1G07400.1	Thale cress	cytosol	76.62	75.16
CDY45448	Canola	cytosol	75.97	75.0
CDY53371	Canola	cytosol	75.97	75.0
AT1G59860.1	Thale cress	cytosol	75.32	74.84
Bra018383.1-P	Field mustard	cytosol	75.32	74.36
Solyc09g015020.1.1	Tomato	cytosol, nucleus	70.78	70.78
CDY53372	Canola	cytosol, plastid	68.83	68.39
Solyc09g015000.2.1	Tomato	cytosol	59.09	67.91
Bra031725.1-P	Field mustard	cytosol	69.48	67.3
Bra018384.1-P	Field mustard	cytosol	69.48	67.3
CDY45447	Canola	cytosol	68.83	66.67
Solyc02g093600.2.1	Tomato	cytosol, plastid	44.16	50.0
Solyc04g072250.2.1	Tomato	cytosol	46.75	44.17
Solyc04g014480.2.1	Tomato	mitochondrion	37.01	39.31
Solyc03g113930.1.1	Tomato	endoplasmic reticulum	46.1	37.77
Solyc01g102960.2.1	Tomato	endoplasmic reticulum	43.51	35.45
Solyc11g020330.1.1	Tomato	plastid	42.86	34.74
Solyc09g011710.2.1	Tomato	cytosol	46.75	34.62
Solyc10g086680.1.1	Tomato	mitochondrion	44.16	29.06

Protein Annotations

EnsemblPlants:Solyc06g076570.1.1	EnsemblPlantsGene:Solyc06g076570.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF190	PFAM:PF00011	PFscan:PS01031
ProteinID:AEP95307.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI00022CC5B2	UniProt:G5DGD4	MapMan:19.1.8.1

Description

Class I small heat shock protein [Source:UniProtKB/TrEMBL;Acc:G5DGD4]

Coordinates

chr6:+:47564101..47564565

Molecular Weight (calculated)

17632.9 Da

IEP (calculated)

5.422

GRAVY (calculated)

-0.684

Length

154 amino acids

Sequence
(BLAST)

001: MSLIPRIFGD RRSTSVFDPF SIDVFDPFKE LGFTVSNSGE TSAFANTRID WKETPEAHVF KADLPGLKKE EVKVEIEEDR VLQISGERNV EKEDKNDTWH
101: RVERSSGKFM RRFRLPENAK MDQIKASMEN GVLTVTVPKE EVKKPDVKSI EISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.