Factsheet for VIT_05s0020g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_02s0025g04710.t01
VIT_03s0017g00210.t01
VIT_04s0008g05610.t01
VIT_07s0031g02330.t01
VIT_07s0129g01050.t01
VIT_07s0130g00490.t01
VIT_09s0002g04360.t01
VIT_09s0002g04930.t01
VIT_09s0002g05010.t01
VIT_09s0002g05080.t01
VIT_09s0002g05210.t01
VIT_09s0002g08860.t01
VIT_09s0002g08870.t01
VIT_09s0002g08880.t01
VIT_10s0042g01070.t01
VIT_13s0019g04380.t01
VIT_14s0060g00850.t01
VIT_15s0046g00320.t01
VIT_15s0048g02000.t01
VIT_16s0115g00130.t01
VIT_17s0000g06020.t01
VIT_17s0000g07350.t01
VIT_18s0001g08380.t01
VIT_18s0001g09850.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03130.1	VIT_09s0002g04360.t01	AT1G52220.1	18813226
AT1G03130.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT1G03130.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT1G03130.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT1G03130.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT1G03130.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT1G03130.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT1G03130.1	VIT_10s0042g01070.t01	AT4G19700.1	21798944
AT1G03130.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT1G03130.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944
AT4G02770.1	VIT_15s0046g00320.t01	AT1G01260.1	21798944
AT4G02770.1	VIT_09s0002g04930.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_09s0002g05010.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_09s0002g05080.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_09s0002g05210.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_09s0002g08860.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_09s0002g08870.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_09s0002g08880.t01	AT1G15670.1	21798944
AT4G02770.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT4G02770.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT4G02770.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT4G02770.1	VIT_15s0048g02000.t01	AT3G61150.1	21798944
AT4G02770.1	VIT_14s0060g00850.t01	AT4G15510.1	23221595
AT4G02770.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT4G02770.1	VIT_02s0025g04710.t01	AT4G22890.1	18243102
AT4G02770.1	VIT_13s0019g04380.t01	AT4G30080.1	21798944
AT4G02770.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91274	Soybean	nucleus, plastid	85.29	85.71
PGSC0003DMT400030843	Potato	cytosol, extracellular, plastid	83.82	82.61
KRH35533	Soybean	plastid	84.8	82.38
VIT_07s0151g01000.t01	Wine grape	plastid	82.35	82.35
Solyc06g054260.1.1	Tomato	plastid	83.82	82.21
Os08t0560900-01	Rice	extracellular, plastid	74.51	74.88
Zm00001d034543_P001	Maize	plastid	73.04	74.87
GSMUA_Achr5P14780_001	Banana	plastid	75.49	74.4
GSMUA_Achr4P17120_001	Banana	plastid	75.49	74.4
EER93246	Sorghum	plastid	72.55	73.63
AT1G03130.1	Thale cress	plastid	73.04	73.04
AT4G02770.1	Thale cress	plastid	72.55	71.15
TraesCS5D01G468400.1	Wheat	plastid	70.59	70.59
TraesCS5A01G457500.1	Wheat	plastid	70.59	70.24
TraesCS5B01G466700.1	Wheat	plastid	70.59	70.24
Zm00001d013039_P001	Maize	plastid	75.0	64.83
CDY22079	Canola	plastid	45.1	61.33
Bra036240.1-P	Field mustard	plastid	71.57	52.33
CDY21916	Canola	plastid	72.06	52.31
HORVU5Hr1G109710.2	Barley	cytosol, plastid	61.76	45.99

Protein Annotations

MapMan:1.1.4.2.4	EntrezGene:100240928	wikigene:100240928	Gene3D:3.30.1470.10	UniProt:A5AEB4	EMBL:AM424418
ProteinID:CAN62373	ProteinID:CAN62373.1	ProteinID:CCB50408	ProteinID:CCB50408.1	EMBL:FN595749	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009538
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	EntrezGene:LOC100240928	wikigene:LOC100240928
PFAM:PF02531	PANTHER:PTHR31982	PANTHER:PTHR31982:SF4	InterPro:PsaD	InterPro:PsaD_sf	SUPFAM:SSF64234
TIGR:TC52546	TIGR:TC61693	UniParc:UPI000151E681	ArrayExpress:VIT_05s0020g03180	EnsemblPlantsGene:VIT_05s0020g03180	EnsemblPlants:VIT_05s0020g03180.t01
unigene:Vvi.6997	RefSeq:XP_002281825	RefSeq:XP_002281825.1	RefSeq:XP_003631987	RefSeq:XP_003631987.1	RefSeq:XP_003631988
RefSeq:XP_003631988.1	RefSeq:XP_003631989	RefSeq:XP_003631989.1	:	:	:

Description

No Description!

Coordinates

chr5:+:4942932..4943720

Molecular Weight (calculated)

22482.1 Da

IEP (calculated)

10.284

GRAVY (calculated)

-0.420

Length

204 amino acids

Sequence
(BLAST)

001: MAMATQASLF TPTLSGDRVT VPWKSSSSLS FTTPKLPKSS VAPRTTIRAM AEEAPTKEAP VGFTPPELDP NTPSPIFGGS TGGLLRKAQV EEFYVITWDS
101: PKEQIFEMPT GGAAIMRQGP NLLKLARKEQ CLALGTRLRS KYKIKYQFYR VFPNGEVQYL HPKDGVYPEK VNPGRQGVGV NFRSIGKNVN PIEVKFTGKQ
201: AYDL

Best Arabidopsis Sequence Match ( AT1G03130.1 )
(BLAST)

001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL

Arabidopsis Description

PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.