Factsheet for VIT_09s0002g04360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_05s0020g03180.t01
VIT_07s0031g02730.t01
VIT_07s0151g01000.t01
VIT_15s0046g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52220.1	VIT_05s0020g03180.t01	AT1G03130.1	18813226
AT1G52220.1	VIT_07s0151g01000.t01	AT1G03130.1	18813226
AT1G52220.1	VIT_02s0025g00640.t01	AT5G41600.1	21798944
AT1G52220.1	VIT_07s0031g02730.t01	AT5G41600.1	21798944
AT1G52220.1	VIT_15s0046g01760.t01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47274	Soybean	plastid	62.33	62.76
Solyc06g066620.2.1	Tomato	plastid	58.9	58.5
GSMUA_Achr6P26770_001	Banana	plastid	57.53	57.93
Bra018954.1-P	Field mustard	plastid	56.85	57.24
CDY67261	Canola	plastid	56.85	57.24
CDY52984	Canola	plastid	56.85	57.24
AT1G52220.1	Thale cress	plastid	56.85	53.21
Os01t0761000-01	Rice	plastid	47.95	46.36
KRH44347	Soybean	plastid	53.42	46.15
TraesCS3D01G296900.1	Wheat	plastid	46.58	45.03
TraesCS3B01G331600.1	Wheat	plastid	45.89	44.08
OQU87593	Sorghum	plastid	45.21	44.0
TraesCS3A01G304900.1	Wheat	plastid	44.52	42.76
Zm00001d012689_P001	Maize	plastid	43.15	37.95
VIT_15s0048g02500.t01	Wine grape	plastid	39.04	33.33
VIT_15s0046g01470.t01	Wine grape	plastid	31.51	27.71
VIT_16s0050g02240.t01	Wine grape	plastid	30.14	27.33
VIT_00s0199g00110.t01	Wine grape	plastid	25.34	18.14
VIT_00s0199g00150.t01	Wine grape	plastid	25.34	18.14

Protein Annotations

EntrezGene:100258354	wikigene:100258354	MapMan:35.1	InterPro:CAAD_dom	ProteinID:CBI36130	ProteinID:CBI36130.3
InterPro:CURT1	UniProt:D7U0I4	EMBL:FN596494	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100258354	wikigene:LOC100258354	PFAM:PF14159	PANTHER:PTHR33222	PANTHER:PTHR33222:SF3
TMHMM:TMhelix	UniParc:UPI00015C8998	ArrayExpress:VIT_09s0002g04360	EnsemblPlantsGene:VIT_09s0002g04360	EnsemblPlants:VIT_09s0002g04360.t01	unigene:Vvi.13961
RefSeq:XP_002284537	RefSeq:XP_002284537.1	RefSeq:XP_002284539	RefSeq:XP_002284539.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:3998146..4001273

Molecular Weight (calculated)

16143.6 Da

IEP (calculated)

7.525

GRAVY (calculated)

0.374

Length

146 amino acids

Sequence
(BLAST)

001: MAYSVLASLP PPLLVHRREA LVRALNGFPV SINRGRQSSL SVVAKATGES SESSTTLSIV KSVQNVWGDP EDRFALFGLG FAAIVAVWAS ANLITAIDNL
101: PLIPGVFEFI GILYSWWFIY RYLLFKPNRE ELFEIINKSV SEVLGQ

Best Arabidopsis Sequence Match ( AT1G52220.1 )
(BLAST)

001: MASISATLPS PLLLTQRKSN LTSIQKLPFS LTRGTNDLSP LSLTRNPSSI SLMVKASGES SDSSTDLDVV STIQNVWDKS EDRLGLIGLG FAGIVALWAS
101: LNLITAIDKL PVISSGFELV GILFSTWFTY RYLLFKPDRQ ELSKIVKKSV ADILGQ

Arabidopsis Description

CURT1CCURT1C [Source:UniProtKB/TrEMBL;Acc:A0A178WBD4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.