Factsheet for Solyc06g066620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g054260.1.1
Solyc08g081730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52220.1	Solyc06g054260.1.1	AT1G03130.1	18813226
AT1G52220.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04360.t01	Wine grape	plastid	58.5	58.9
KRH47274	Soybean	plastid	53.06	53.79
Bra018954.1-P	Field mustard	plastid	48.3	48.97
CDY52984	Canola	plastid	48.3	48.97
CDY67261	Canola	plastid	48.3	48.97
GSMUA_Achr6P26770_001	Banana	plastid	44.9	45.52
AT1G52220.1	Thale cress	plastid	45.58	42.95
KRH44347	Soybean	plastid	44.22	38.46
Os01t0761000-01	Rice	plastid	34.69	33.77
OQU87593	Sorghum	plastid	34.01	33.33
TraesCS3D01G296900.1	Wheat	plastid	34.01	33.11
TraesCS3B01G331600.1	Wheat	plastid	34.01	32.89
TraesCS3A01G304900.1	Wheat	plastid	34.01	32.89
Zm00001d012689_P001	Maize	plastid	34.69	30.72
Solyc10g005050.2.1	Tomato	plastid	34.69	28.33
Solyc10g011770.2.1	Tomato	plastid	30.61	26.63
Solyc01g095430.2.1	Tomato	plastid	29.93	25.88
Solyc03g007830.2.1	Tomato	plastid	29.93	24.86
Solyc11g010480.1.1	Tomato	plastid	23.81	6.73

Protein Annotations

MapMan:35.1	InterPro:CAAD_dom	InterPro:CURT1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0016021	UniProt:K4C7T7	PFAM:PF14159	PANTHER:PTHR33222	PANTHER:PTHR33222:SF3	EnsemblPlantsGene:Solyc06g066620.2
EnsemblPlants:Solyc06g066620.2.1	TMHMM:TMhelix	UniParc:UPI0002765F71	SEG:seg	:	:

Description

Protein CURVATURE THYLAKOID 1C, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G52220) UniProtKB/Swiss-Prot;Acc:Q9M812]

Coordinates

chr6:-:41866535..41869314

Molecular Weight (calculated)

15903.3 Da

IEP (calculated)

9.727

GRAVY (calculated)

0.367

Length

147 amino acids

Sequence
(BLAST)

001: MASIVVAKLH PPPPAITGRQ TLFGTVNTST LFVPTTRQGH LAITAKATSE SSESLSSPSV VKSVKNIWDN PEDRIAVIGL GIAAIVGFWA ASNFVAAIDS
101: LPLIPGVFEF IGILFSTWFV YRYLLFKPNR QELFQGINKS ISDILGQ

Best Arabidopsis Sequence Match ( AT1G52220.1 )
(BLAST)

001: MASISATLPS PLLLTQRKSN LTSIQKLPFS LTRGTNDLSP LSLTRNPSSI SLMVKASGES SDSSTDLDVV STIQNVWDKS EDRLGLIGLG FAGIVALWAS
101: LNLITAIDKL PVISSGFELV GILFSTWFTY RYLLFKPDRQ ELSKIVKKSV ADILGQ

Arabidopsis Description

CURT1CCURT1C [Source:UniProtKB/TrEMBL;Acc:A0A178WBD4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.