Factsheet for GSMUA_Achr6P26770_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P15760_001
GSMUA_Achr3P31920_001
GSMUA_Achr4P08400_001
GSMUA_Achr4P17120_001
GSMUA_Achr5P06850_001
GSMUA_Achr5P14780_001
GSMUA_Achr6P31860_001
GSMUA_Achr8P27830_001
GSMUA_Achr9P05440_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52220.1	GSMUA_Achr4P17120_001	AT1G03130.1	18813226
AT1G52220.1	GSMUA_Achr5P14780_001	AT1G03130.1	18813226
AT1G52220.1	GSMUA_Achr10P...	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr3P15760_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr3P31920_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr4P08400_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr5P06850_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr6P31860_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr8P27830_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_Achr9P05440_001	AT5G41600.1	21798944
AT1G52220.1	GSMUA_AchrUn_...	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04360.t01	Wine grape	plastid	57.93	57.53
Bra018954.1-P	Field mustard	plastid	48.97	48.97
CDY52984	Canola	plastid	48.97	48.97
KRH47274	Soybean	plastid	48.97	48.97
CDY67261	Canola	plastid	48.28	48.28
AT1G52220.1	Thale cress	plastid	50.34	46.79
Solyc06g066620.2.1	Tomato	plastid	45.52	44.9
Os01t0761000-01	Rice	plastid	46.21	44.37
OQU87593	Sorghum	plastid	45.52	44.0
TraesCS3B01G331600.1	Wheat	plastid	44.14	42.11
TraesCS3D01G296900.1	Wheat	plastid	43.45	41.72
TraesCS3A01G304900.1	Wheat	plastid	42.76	40.79
Zm00001d012689_P001	Maize	plastid	42.76	37.35
KRH44347	Soybean	plastid	42.76	36.69
GSMUA_Achr8P12340_001	Banana	plastid	32.41	26.86
GSMUA_AchrUn_...	Banana	plastid	31.03	26.79
GSMUA_Achr5P17930_001	Banana	cytosol	18.62	23.89
GSMUA_Achr3P20270_001	Banana	plastid	26.21	22.49
GSMUA_Achr10P...	Banana	plastid	26.9	22.41
GSMUA_Achr6P04200_001	Banana	cytosol	17.93	18.98
GSMUA_Achr7P18720_001	Banana	plastid	27.59	17.17
GSMUA_Achr7P12860_001	Banana	plastid	17.93	10.92

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26770_001	EnsemblPlants:GSMUA_Achr6T26770_001	EnsemblPlantsGene:GSMUA_Achr6G26770_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0016021	InterPro:CAAD_dom	InterPro:CURT1	PANTHER:PTHR33222	PANTHER:PTHR33222:SF3	PFAM:PF14159
TMHMM:TMhelix	UniParc:UPI000295E278	UniProt:M0TAH2	MapMan:35.1	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26770_001]

Coordinates

chr6:-:27444001..27446949

Molecular Weight (calculated)

15906.4 Da

IEP (calculated)

9.564

GRAVY (calculated)

0.415

Length

145 amino acids

Sequence
(BLAST)

001: MAFASAVTPP SLFLVPSKPI VTNPRKFPVP AVTGGRRCLS VVVKAIGDSS DTSSDASIVK DVQNAWSNYE DRIAFVGLGF AAIVAVWASG HLIEAVDKLP
101: LFPSVFEFIG ILFSWWFIYR YLLFKPDREE LSKIIKNAIS TVLGK

Best Arabidopsis Sequence Match ( AT1G52220.1 )
(BLAST)

001: MASISATLPS PLLLTQRKSN LTSIQKLPFS LTRGTNDLSP LSLTRNPSSI SLMVKASGES SDSSTDLDVV STIQNVWDKS EDRLGLIGLG FAGIVALWAS
101: LNLITAIDKL PVISSGFELV GILFSTWFTY RYLLFKPDRQ ELSKIVKKSV ADILGQ

Arabidopsis Description

CURT1CCURT1C [Source:UniProtKB/TrEMBL;Acc:A0A178WBD4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.