Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
- nucleus 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra036240.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52220.1 | Bra036240.1-P | AT1G03130.1 | 18813226 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52984 | Canola | plastid | 99.31 | 99.31 |
| CDY67261 | Canola | plastid | 97.24 | 97.24 |
| AT1G52220.1 | Thale cress | plastid | 86.9 | 80.77 |
| KRH47274 | Soybean | plastid | 62.07 | 62.07 |
| VIT_09s0002g04360.t01 | Wine grape | plastid | 57.24 | 56.85 |
| GSMUA_Achr6P26770_001 | Banana | plastid | 48.97 | 48.97 |
| Solyc06g066620.2.1 | Tomato | plastid | 48.97 | 48.3 |
| KRH44347 | Soybean | plastid | 51.03 | 43.79 |
| OQU87593 | Sorghum | plastid | 41.38 | 40.0 |
| TraesCS3D01G296900.1 | Wheat | plastid | 39.31 | 37.75 |
| Os01t0761000-01 | Rice | plastid | 38.62 | 37.09 |
| TraesCS3B01G331600.1 | Wheat | plastid | 38.62 | 36.84 |
| TraesCS3A01G304900.1 | Wheat | plastid | 37.93 | 36.18 |
| Zm00001d012689_P001 | Maize | plastid | 37.24 | 32.53 |
| Bra040482.1-P | Field mustard | plastid | 35.86 | 31.14 |
| Bra004504.1-P | Field mustard | plastid | 35.86 | 28.42 |
| Bra037380.1-P | Field mustard | plastid | 29.66 | 26.54 |
| Bra008533.1-P | Field mustard | plastid | 30.34 | 26.04 |
| Bra000947.1-P | Field mustard | plastid | 28.97 | 25.61 |
| Bra010636.1-P | Field mustard | plastid | 20.69 | 15.71 |
Protein Annotations
| MapMan:35.1 | EnsemblPlantsGene:Bra018954 | EnsemblPlants:Bra018954.1 | EnsemblPlants:Bra018954.1-P | InterPro:CAAD_dom | InterPro:CURT1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 | UniProt:M4DR11 | PFAM:PF14159 |
| PANTHER:PTHR33222 | PANTHER:PTHR33222:SF3 | TMHMM:TMhelix | UniParc:UPI000253E909 | SEG:seg | : |
Description
AT1G52220 (E=4e-043) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Coordinates
chrA06:+:1024194..1025157
Molecular Weight (calculated)
16023.6 Da
IEP (calculated)
9.973
GRAVY (calculated)
0.210
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVSATLPP PLLLTQRKPN LTSVQKLPFS LIRDRRSHSM SLMVKASGKS SESSDLDVIS SIQNVWDKSE DRLGLIGLSF AAIVALWASL NIITAIDKLP
101: VISSGFELVG ILFSTWFTYR YLLFKPDREE LSQIVKKSVA DILGQ
101: VISSGFELVG ILFSTWFTYR YLLFKPDREE LSQIVKKSVA DILGQ
001: MASISATLPS PLLLTQRKSN LTSIQKLPFS LTRGTNDLSP LSLTRNPSSI SLMVKASGES SDSSTDLDVV STIQNVWDKS EDRLGLIGLG FAGIVALWAS
101: LNLITAIDKL PVISSGFELV GILFSTWFTY RYLLFKPDRQ ELSKIVKKSV ADILGQ
101: LNLITAIDKL PVISSGFELV GILFSTWFTY RYLLFKPDRQ ELSKIVKKSV ADILGQ
Arabidopsis Description
CURT1CCURT1C [Source:UniProtKB/TrEMBL;Acc:A0A178WBD4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.