Factsheet for Bra036240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra003439.1-P
Bra011162.1-P
Bra011328.1-P
Bra012532.1-P
Bra012650.1-P
Bra012987.1-P
Bra013423.1-P
Bra013653.1-P
Bra018081.1-P
Bra018126.1-P
Bra018954.1-P
Bra019349.1-P
Bra024109.1-P
Bra026116.1-P
Bra026753.1-P
Bra032176.1-P
Bra033273.1-P
Bra033769.1-P
Bra038081.1-P
Bra039542.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03130.1	Bra018954.1-P	AT1G52220.1	18813226
AT1G03130.1	Bra032176.1-P	AT2G23290.1	21798944
AT1G03130.1	Bra000638.1-P	AT4G08150.1	21798944
AT1G03130.1	Bra012532.1-P	AT4G19700.1	21798944
AT1G03130.1	Bra013423.1-P	AT4G19700.1	21798944
AT1G03130.1	Bra011328.1-P	AT4G32190.1	21798944
AT1G03130.1	Bra012987.1-P	AT5G61010.1	21798944
AT4G02770.1	Bra033273.1-P	AT1G01260.1	21798944
AT4G02770.1	Bra026116.1-P	AT1G15670.1	21798944
AT4G02770.1	Bra026753.1-P	AT1G15670.1	21798944
AT4G02770.1	Bra018126.1-P	AT3G47620.1	21798944
AT4G02770.1	Bra018081.1-P	AT3G48150.1	21798944
AT4G02770.1	Bra033769.1-P	AT3G48150.1	21798944
AT4G02770.1	Bra003439.1-P	AT3G61150.1	21798944
AT4G02770.1	Bra038081.1-P	AT4G15510.1	23221595
AT4G02770.1	Bra039542.1-P	AT4G15510.1	23221595
AT4G02770.1	Bra012650.1-P	AT4G17680.1	21798944
AT4G02770.1	Bra013653.1-P	AT4G22890.1	18243102
AT4G02770.1	Bra019349.1-P	AT4G22890.1	18243102
AT4G02770.1	Bra011162.1-P	AT4G30080.1	21798944
AT4G02770.1	Bra024109.1-P	AT4G30080.1	21798944
AT4G02770.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22079	Canola	plastid	53.76	100.0
AT4G02770.1	Thale cress	plastid	67.38	90.38
AT1G03130.1	Thale cress	plastid	65.59	89.71
KRG91274	Soybean	nucleus, plastid	54.12	74.38
PGSC0003DMT400030843	Potato	cytosol, extracellular, plastid	54.48	73.43
KRH35533	Soybean	plastid	55.2	73.33
EER93246	Sorghum	plastid	52.33	72.64
Os08t0560900-01	Rice	extracellular, plastid	52.69	72.41
Solyc06g054260.1.1	Tomato	plastid	53.76	72.12
VIT_05s0020g03180.t01	Wine grape	plastid	52.33	71.57
VIT_07s0151g01000.t01	Wine grape	plastid	52.33	71.57
TraesCS5D01G468400.1	Wheat	plastid	51.61	70.59
GSMUA_Achr5P14780_001	Banana	plastid	52.33	70.53
TraesCS5A01G457500.1	Wheat	plastid	51.61	70.24
TraesCS5B01G466700.1	Wheat	plastid	51.61	70.24
GSMUA_Achr4P17120_001	Banana	plastid	51.61	69.57
Zm00001d034543_P001	Maize	plastid	48.75	68.34
Zm00001d013039_P001	Maize	plastid	49.46	58.47
HORVU5Hr1G109710.2	Barley	cytosol, plastid	46.59	47.45

Protein Annotations

MapMan:1.1.4.2.4	Gene3D:3.30.1470.10	EnsemblPlantsGene:Bra036240	EnsemblPlants:Bra036240.1	EnsemblPlants:Bra036240.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009522	GO:GO:0009538
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	UniProt:M4F584	PFAM:PF02531
PANTHER:PTHR31982	PANTHER:PTHR31982:SF4	InterPro:PsaD	InterPro:PsaD_sf	SUPFAM:SSF64234	UniParc:UPI0002541F12
SEG:seg	:	:	:	:	:

Description

AT4G02770 (E=3e-098) PSAD-1 | PSAD-1 (photosystem I subunit D-1)

Coordinates

chrA09:+:77326..78561

Molecular Weight (calculated)

30680.3 Da

IEP (calculated)

9.528

GRAVY (calculated)

-0.433

Length

279 amino acids

Sequence
(BLAST)

001: MAAQASGLFS SAVTTAATSG VKKLHLFTTS HRPRSLSFPK TAIRAEKADS AAAAPAAAVK EEAPVGFTPP QLDPNTPSPI FAGSTGGLLR KAQVEEFYVI
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKINY QFYRVFPNGE VQYLHPKDGV YPEKANAGRE GVGQNMRSIG KNVSPIEVKF
201: TGKQSYDLYS TSFLDFVRKS RNGFLINKSD HPQEDAYLGI QAALEWIEAK EDLKLDNSDI QATSYLETDT KFSSFTLNN

Best Arabidopsis Sequence Match ( AT4G02770.1 )
(BLAST)

001: MATQAAGIFN SAITTAATSG VKKLHFFSTT HRPKSLSFTK TAIRAEKTDS SAAAAAAPAT KEAPVGFTPP QLDPNTPSPI FAGSTGGLLR KAQVEEFYVI
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKITY QFYRVFPNGE VQYLHPKDGV YPEKANPGRE GVGLNMRSIG KNVSPIEVKF
201: TGKQSYDL

Arabidopsis Description

PSAD1Photosystem I reaction center subunit II-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7H1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.