Factsheet for Bra019349.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012203.1-P
Bra016481.1-P
Bra027109.1-P
Bra031471.1-P
Bra036240.1-P
Bra037182.1-P
Bra040469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	Bra012203.1-P	AT1G20020.1	18243102
AT4G22890.1	Bra016481.1-P	AT1G20020.1	18243102
AT4G22890.1	Bra027109.1-P	AT1G60950.1	18243102
AT4G22890.1	Bra031471.1-P	AT1G60950.1	18243102
AT4G22890.1	Bra040469.1-P	AT1G60950.1	18243102
AT4G22890.1	Bra036240.1-P	AT4G02770.1	18243102
AT4G22890.1	Bra037182.1-P	AT5G66190.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68977	Canola	plastid	99.38	99.38
CDX94134	Canola	plastid	95.94	95.94
Bra013653.1-P	Field mustard	plastid	90.0	90.28
AT4G22890.1	Thale cress	plastid	89.06	87.96
Bra000757.1-P	Field mustard	plastid	77.5	77.5
KRH57278	Soybean	plastid	72.19	71.96
Zm00001d034904_P001	Maize	plastid	51.25	71.62
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	62.81	71.28
VIT_02s0025g04710.t01	Wine grape	plastid	72.5	71.17
PGSC0003DMT400032525	Potato	plastid	70.94	71.16
KRH04003	Soybean	plastid	73.12	70.48
KRH26378	Soybean	plasma membrane	32.19	69.59
PGSC0003DMT400058521	Potato	plastid	69.38	69.38
KRH77457	Soybean	plastid	67.81	68.67
Solyc08g007770.2.1	Tomato	plastid	65.0	67.75
Solyc08g080050.2.1	Tomato	plastid	64.38	66.88
GSMUA_Achr2P12240_001	Banana	plastid	65.31	66.14
Os08t0526300-02	Rice	plastid	64.69	62.92
Os03t0857400-01	Rice	plasma membrane	63.12	62.35
Zm00001d034900_P001	Maize	plastid	62.5	62.11
KXG34948	Sorghum	plastid	63.44	61.14
TraesCS4A01G319000.1	Wheat	plastid	61.25	60.31
TraesCS5B01G560400.1	Wheat	plastid	61.25	60.31
TraesCS5D01G569800.1	Wheat	plastid	60.94	60.19
HORVU5Hr1G124210.2	Barley	plastid	61.25	60.12
Zm00001d019454_P001	Maize	plastid	62.81	60.0
KXG37086	Sorghum	plastid	60.94	48.03
Os08t0310500-00	Rice	plastid	11.88	29.01

Protein Annotations

EnsemblPlants:Bra019349.1	EnsemblPlants:Bra019349.1-P	EnsemblPlantsGene:Bra019349	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002540E0A	UniProt:M4DS56
MapMan:1.1.6.1.2	:	:	:	:	:

Description

AT4G22890 (E=8e-164) PGR5-LIKE A | PGR5-LIKE A

Coordinates

chrA03:+:24763484..24765142

Molecular Weight (calculated)

35390.6 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.027

Length

320 amino acids

Sequence
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPTASLSSPS PRTQWAQLSP GRSISLRKRF FLLPAKATTE QSGQGGGEDV DSNIMPYCSI NKAEKKSIGE MEQEFLQALQ
101: SFYYDGKATM SNEEFDNLKE ELMWEGSSVV MLSSDEQRFL EASMAYVSGN PILNDEEFDK LKLKLKIDGS EIVCEGPRCS LRSKKVYSDL AVDYFKMLLL
201: NVPATVVALG LFFFLDDITG FEITYILELS EPYSFIFTWF AAVPLIVYLA LTITKLIIKD FLILKGPCPN CGTENTSFFG TILSISSGGK TNTVKCTNCG
301: TAMEYDSGSR LITLPEGSQA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.