CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71257
CDX81408
CDX83730
CDX83820
CDY03773
CDY12877
CDY18592
CDY21916
CDY22079
CDY33318
CDY43420
CDY44833
CDY46194
CDY54579
CDY54581
CDY55097
CDY57601
CDY57760
CDY62940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	CDX83730	AT1G20020.1	18243102
AT4G22890.1	CDY43420	AT1G20020.1	18243102
AT4G22890.1	CDY57601	AT1G20020.1	18243102
AT4G22890.1	CDY62940	AT1G20020.1	18243102
AT4G22890.1	CDY03773	AT1G60950.1	18243102
AT4G22890.1	CDY12877	AT1G60950.1	18243102
AT4G22890.1	CDY33318	AT1G60950.1	18243102
AT4G22890.1	CDY44833	AT1G60950.1	18243102
AT4G22890.1	CDY46194	AT1G60950.1	18243102
AT4G22890.1	CDY54579	AT1G60950.1	18243102
AT4G22890.1	CDY54581	AT1G60950.1	18243102
AT4G22890.1	CDY21916	AT4G02770.1	18243102
AT4G22890.1	CDY22079	AT4G02770.1	18243102
AT4G22890.1	CDX81408	AT5G66190.1	18243102
AT4G22890.1	CDX83820	AT5G66190.1	18243102
AT4G22890.1	CDY18592	AT5G66190.1	18243102
AT4G22890.1	CDY55097	AT5G66190.1	18243102
AT4G22890.1	CDY57760	AT5G66190.1	18243102
AT4G22890.1	CDX71257	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019349.1-P	Field mustard	plastid	95.94	95.94
CDY68977	Canola	plastid	95.94	95.94
CDY10819	Canola	plastid	87.5	87.77
CDY41285	Canola	plastid	87.5	87.77
AT4G22890.1	Thale cress	plastid	87.81	86.73
CDX90812	Canola	plastid	79.38	79.38
CDY51552	Canola	plastid	79.38	79.38
KRH57278	Soybean	plastid	72.19	71.96
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	62.81	71.28
Zm00001d034904_P001	Maize	plastid	50.94	71.18
VIT_02s0025g04710.t01	Wine grape	plastid	71.88	70.55
PGSC0003DMT400032525	Potato	plastid	70.31	70.53
KRH04003	Soybean	plastid	72.19	69.58
KRH26378	Soybean	plasma membrane	31.88	68.92
PGSC0003DMT400058521	Potato	plastid	68.75	68.75
KRH77457	Soybean	plastid	67.81	68.67
Solyc08g007770.2.1	Tomato	plastid	64.38	67.1
Solyc08g080050.2.1	Tomato	plastid	64.38	66.88
GSMUA_Achr2P12240_001	Banana	plastid	64.06	64.87
Zm00001d034900_P001	Maize	plastid	63.12	62.73
Os08t0526300-02	Rice	plastid	64.38	62.61
Os03t0857400-01	Rice	plasma membrane	62.81	62.04
KXG34948	Sorghum	plastid	63.75	61.45
TraesCS5D01G569800.1	Wheat	plastid	60.94	60.19
TraesCS4A01G319000.1	Wheat	plastid	60.94	60.0
TraesCS5B01G560400.1	Wheat	plastid	60.94	60.0
Zm00001d019454_P001	Maize	plastid	62.81	60.0
HORVU5Hr1G124210.2	Barley	plastid	60.94	59.82
KXG37086	Sorghum	plastid	60.62	47.78
Os08t0310500-00	Rice	plastid	11.88	29.01

Protein Annotations

EnsemblPlants:CDX94134	EnsemblPlantsGene:GSBRNA2T00157051001	GO:A0A078E0C7	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:CDX94134
ProteinID:CDX94134.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE6462	MapMan:1.1.6.1.2	:

Description

BnaC07g37680D

Coordinates

chrLK031879:+:897637..900316

Molecular Weight (calculated)

35346.6 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.017

Length

320 amino acids

Sequence
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPTASLSSPS PRTQWAQLSP GRSISLRKKF FLLPAKATTE QSGQAGGEDV DSNIMPYCSI NKAEKKSIGE MEQEFLQALQ
101: SFYYDGKATM SNEEFDNLKE ELMWEGSSVV MLSSDEQRFL EASMAYVSGN PILNDEEFDK LKLKLKIDGS EIVCEGPRCS LRGKKVYSDL AVDYFKMLLL
201: NVPATVVALG LFFFLDDITG FEITYILELS EPYSFIFTWF AAVPLIVYLA LTITKLIIKD FLILKGPCPN CGTENTSFFG TILSISSGGK TNTVKCTNCG
301: TAMEYDSGSR LITLPEGSQA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.