CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX94134
CDY10819
CDY41285
CDY68977

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	CDX94134	AT4G22890.1	18243102
AT1G20020.1	CDY10819	AT4G22890.1	18243102
AT1G20020.1	CDY41285	AT4G22890.1	18243102
AT1G20020.1	CDY68977	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57601	Canola	plastid	96.15	95.37
Bra012203.1-P	Field mustard	plastid	95.6	94.82
CDY62940	Canola	plastid	92.03	90.3
CDX83730	Canola	plastid	93.41	90.19
AT1G20020.1	Thale cress	plastid	89.84	88.62
Os06t0107700-01	Rice	plastid	72.25	72.65
CDY18592	Canola	plastid	70.6	70.99
Zm00001d045575_P001	Maize	plastid	69.23	70.99
TraesCS7A01G020500.1	Wheat	plastid	70.33	70.91
TraesCS7D01G016800.1	Wheat	plastid	70.05	70.44
CDX81408	Canola	plastid	70.05	70.25
TraesCS4A01G472500.1	Wheat	plastid	69.78	70.17
EER89050	Sorghum	plastid	69.23	69.81
EES04249	Sorghum	plastid	68.96	68.21
TraesCS6B01G015000.1	Wheat	plastid	67.58	67.77
TraesCS6D01G012200.1	Wheat	plastid, unclear	66.48	67.04
HORVU7Hr1G002210.8	Barley	plastid	66.21	66.94
TraesCS6A01G009200.1	Wheat	plastid	66.76	66.94
Zm00001d011833_P001	Maize	plastid	67.58	66.67
Os02t0103800-01	Rice	plastid	66.76	66.39
HORVU6Hr1G000620.2	Barley	plastid	66.76	60.75
CDY55097	Canola	vacuole	60.71	58.31
Zm00001d042049_P001	Maize	plastid	68.41	51.13
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.6	43.35
CDY46362	Canola	plastid	42.03	40.48
CDY39167	Canola	plastid	42.03	40.48
CDY51794	Canola	plastid	25.82	38.84
CDY02299	Canola	plastid	40.66	38.74
CDY09570	Canola	plastid	40.66	38.74
CDY23149	Canola	endoplasmic reticulum, plastid	15.66	34.13
CDY40011	Canola	cytosol, mitochondrion, peroxisome	17.58	27.23
CDY57760	Canola	plastid	70.6	25.6
CDY20886	Canola	mitochondrion, plastid	15.11	25.46

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	GO:A0A078HY18	UniProt:A0A078HY18
EnsemblPlants:CDY43420	ProteinID:CDY43420	ProteinID:CDY43420.1	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00076633001	InterPro:IPR017927	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PFAM:PF00970	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384
PANTHER:PTHR43314	PANTHER:PTHR43314:SF5	MetaCyc:PWY-101	MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI0004EEAB2E	SEG:seg	:	:	:

Description

BnaC07g14870DBnaC07g14870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY18]

Coordinates

chrLK032556:-:95566..97812

Molecular Weight (calculated)

40589.7 Da

IEP (calculated)

8.968

GRAVY (calculated)

-0.373

Length

364 amino acids

Sequence
(BLAST)

001: MASTLNAAVS LTASKSSSLP ATSCAIAPDR IRFAKGAFYY KSNNVVTSRR VVSVRAEVTT TDTPPVKKVE KESKKNEEGV ITNKYRPKEP YTGKVLLNTK
101: ITADDAPGET WHMVFSHQGE IPYREGQSVG VIADGIDKNG KPHKVRLYSI ASSALGDLGN SETVSLCVKR LVYTNDAGEV VKGVCSNFLC DLKPGSDVKL
201: TGPVGKEMLM PKDPNATVIM LATGTGIAPF RSFLWKMFFE KHDDYKASEY SAWLFLGKPN LIFVEFDKMK AKAPENFRVD YAISREQAND KGEKMYIQTR
301: MAQYAPELWE LLKKDNTFVY MCGLKGMEKG IDDIMVSLAA NDGIDWFDYK KQLKKAEQWN VEVY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.