CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 4
extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76652	Soybean	cytosol, peroxisome, plastid	22.16	46.25
Bra012057.1-P	Field mustard	plastid	32.93	31.43
CDX83820	Canola	endoplasmic reticulum, plasma membrane	25.75	24.86
CDY18592	Canola	plastid	41.92	19.34
CDX81408	Canola	plastid	41.92	19.28
CDY57601	Canola	plastid	39.52	17.98
CDY55097	Canola	vacuole	39.52	17.41
Zm00001d023296_P002	Maize	plastid	25.15	16.94
CDX83730	Canola	plastid	37.13	16.45
CDY62940	Canola	plastid	36.53	16.44
Zm00001d005458_P003	Maize	plastid	19.76	16.26
CDY43420	Canola	plastid	34.13	15.66
Zm00001d034099_P002	Maize	plastid	33.53	15.14
CDY51794	Canola	plastid	19.76	13.64
CDY46362	Canola	plastid	27.54	12.17
CDY39167	Canola	plastid	27.54	12.17
CDY09570	Canola	plastid	26.95	11.78
CDY02299	Canola	plastid	26.95	11.78
CDY57760	Canola	plastid	40.72	6.77
CDY20886	Canola	mitochondrion, plastid	4.19	3.24
CDY40011	Canola	cytosol, mitochondrion, peroxisome	4.19	2.98

Protein Annotations

EnsemblPlants:CDY23149	EnsemblPlantsGene:GSBRNA2T00021671001	Gene3D:3.40.50.80	GO:A0A078GCT7	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7	ProteinID:CDY23149	ProteinID:CDY23149.1	SEG:seg
SUPFAM:SSF52343	TMHMM:TMhelix	UniParc:UPI0004EECE15	UniProt:A0A078GCT7	MapMan:35.1	:

Description

BnaC09g19030DBnaC09g19030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCT7]

Coordinates

chrLK032140:-:598516..599256

Molecular Weight (calculated)

18929.9 Da

IEP (calculated)

7.962

GRAVY (calculated)

0.047

Length

167 amino acids

Sequence
(BLAST)

001: MAISPPSSAK THSLVYVLCF FFSISSSMFL LLCSLFRRPR LLVVVGSVLH FLISFIKSYD FSQTFNGLAW LFLDVSTNIS LLYKEEFDPS HNKLAVSREQ
101: TNEKGEKMYI QTRMAEYAEE LWELLKKKTT PLFTCVVSRG GGGTNQVSAA HGCRDRLVGV QEEIKEE

Best Arabidopsis Sequence Match ( AT1G20020.2 )
(BLAST)

001: MVFSHQGEIP YREGQSVGVI ADGIDKNGKP HKVRLYSIAS SALGDLGNSE TVSLCVKRLV YTNDQGETVK GVCSNFLCDL APGSDVKLTG PVGKEMLMPK
101: DPNATVIMLA TGTGIAPFRS FLWKMFFEKH DDYKFNGLAW LFLGVPTTSS LLYQEEFDKM KAKAPENFRV DYAISREQAN DKGEKMYIQT RMAQYAAELW
201: ELLKKDNTFV YMCGLKGMEK GIDDIMVSLA ANDGIDWFDY KKQLKKAEQW NVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.