CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX94134
CDY10819
CDY41285
CDY68977

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	CDX94134	AT4G22890.1	18243102
AT5G66190.1	CDY10819	AT4G22890.1	18243102
AT5G66190.1	CDY41285	AT4G22890.1	18243102
AT5G66190.1	CDY68977	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18592	Canola	plastid	33.96	94.2
CDX81408	Canola	plastid	33.96	93.94
AT5G66190.1	Thale cress	plastid	31.77	88.61
KRH69775	Soybean	plastid	29.48	81.77
KRH28804	Soybean	plastid	29.38	81.49
KRH08061	Soybean	nucleus, plastid	29.38	81.49
VIT_04s0023g03510.t01	Wine grape	plastid	29.28	81.22
GSMUA_Achr11P...	Banana	plastid	28.29	79.33
Solyc02g062130.2.1	Tomato	plastid	28.29	78.45
GSMUA_Achr1P02830_001	Banana	plastid	28.09	78.33
PGSC0003DMT400009192	Potato	extracellular	28.09	77.9
CDY55097	Canola	vacuole	28.59	75.73
Zm00001d045575_P001	Maize	plastid	26.2	74.08
CDY57601	Canola	plastid	26.59	72.75
EES04249	Sorghum	plastid	26.59	72.55
EER89050	Sorghum	plastid	26.0	72.3
TraesCS6D01G012200.1	Wheat	plastid, unclear	25.9	72.02
TraesCS6B01G015000.1	Wheat	plastid	26.0	71.9
TraesCS6A01G009200.1	Wheat	plastid	26.0	71.9
Solyc02g083810.2.1	Tomato	plastid	26.49	71.89
Os06t0107700-01	Rice	plastid	25.9	71.82
TraesCS7A01G020500.1	Wheat	plastid	25.8	71.75
Os02t0103800-01	Rice	plastid	26.1	71.58
TraesCS7D01G016800.1	Wheat	plastid	25.7	71.27
TraesCS4A01G472500.1	Wheat	plastid	25.7	71.27
Zm00001d011833_P001	Maize	plastid	26.1	71.0
CDY43420	Canola	plastid	25.6	70.6
CDY62940	Canola	plastid	25.8	69.81
CDX83730	Canola	plastid	26.2	69.76
GSMUA_Achr8P13460_001	Banana	plastid	28.39	67.54
HORVU7Hr1G002210.8	Barley	plastid	23.9	66.67
HORVU6Hr1G000620.2	Barley	plastid	25.9	65.0
Zm00001d042049_P001	Maize	plastid	26.69	55.03
CDX83820	Canola	endoplasmic reticulum, plasma membrane	8.47	49.13
CDY51794	Canola	plastid	10.56	43.8
CDY02299	Canola	plastid	16.53	43.46
CDY39167	Canola	plastid	16.33	43.39
CDY09570	Canola	plastid	16.43	43.19
CDY46362	Canola	plastid	16.24	43.12
CDY23149	Canola	endoplasmic reticulum, plastid	6.77	40.72
CDY40011	Canola	cytosol, mitochondrion, peroxisome	6.77	28.94
CDY20886	Canola	mitochondrion, plastid	5.78	26.85

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:1.25.10.10	Gene3D:2.40.30.10	Gene3D:3.40.50.80	GO:A0A078J515
UniProt:A0A078J515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY57760	ProteinID:CDY57760
ProteinID:CDY57760.1	ncoils:Coil	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004324	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00022603001	InterPro:IPR000225	InterPro:IPR011989	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PFAM:PF00514	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR23315	PANTHER:PTHR23315:SF155
MetaCyc:PWY-101	MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM00185	SUPFAM:SSF48371	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI0004EECD9F	SEG:seg	:	:	:

Description

BnaC02g45020DBnaC02g45020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J515]

Coordinates

chrLK033602:+:405..6330

Molecular Weight (calculated)

110482.0 Da

IEP (calculated)

7.495

GRAVY (calculated)

-0.250

Length

1004 amino acids

Sequence
(BLAST)

0001: MADIVKQILA KPIQLSDQVV KAADEASAFK QECAEVKAKT EKLAGLLRQA ARASSDLYER PTRRIIDDTE QMLDKAFSLV LKCRGNGIMK RVFTIIPAAA
0101: FRKMSAQLEN SISDVSWLLR VSAPAEDRGD AGYLGLPPIA ANEPILCLIW EQIALLHTGS LEDRSDAAAS LVSLARDNDR YTKLIIEEGG VGPLLKLLKE
0201: GKPEGQENAA RALGLLGRDP ESVEHMIHGG ACSVFGKVLK EGPMKVQAVV AWATSELVSN HPKCQDMFAQ HNAIRLLVGH LAFETVQEHS KYAIANNKAT
0301: SIHHAVVLAK ESPHSAPAKA VDDDQSSIPH PTGKQMPNQM HSVVVSTMAN PPKKSTSNGV LQSKGGNLQP HQNSTSKTRE LEDSATKCQM KAMAARALWK
0401: LAKGNSTICK SITESRALLC FAVLIDKGNE EVRYNSAMAL MEITAVAEQD ADLRRSAFKP NSPACKAVVD QVLKIIEIAD SELLIPCMRT IGNLARTFRA
0501: TESRMIGPLV KLLDEREPEV TGEAAVALTK FACTENYLHK DHSRSIIEAG GGKHLVQLAY FGESGVQIPA LELLCYIALN VPDSEQLAKD EVLAVLEWAS
0601: KQSWVTQLES LEALLQEAKG RLDLYQSKGS REFYPFFHYC SNMAAAAAAA IAAAVSFPSS KSSSSLPTKT SFVSPQRIFL NNKSTREACS YGGIVKAQVT
0701: TEVPVKVVKE SKKQEEGIVV NKFKPKDPYT GRCLLNTRIT GDDAPGETWH IVFTTQGEVP YREGQSIGVI PEGIDKNGKP HKLRLYSIAS SAIGDFGDSK
0801: TVSLCVKRLV YTNESGELVK GVCSNFLCDL KPGDEAKITG PVGKEMLMPK DPNATTIMLA TGTGIAPFRS FLWKMFFEEH EDYKFNGLAW LFLGVPTSSS
0901: LLYKEFEKMK EKNPENFRLD FAVSREQTND KGEKMYIQTR MAEYAQELWE LLKKDNTFVY MCGLKGMEKG IDEIMVSLAA KDGIDWLEYK KQLKRSEQWN
1001: VEVY

Best Arabidopsis Sequence Match ( AT5G66200.1 )
(BLAST)

001: MADIVKQILA KPIQLSDQVV KAADEASSFK QECGELKAKT EKLAGLLRQA ARASNDLYER PTRRIIDDTE QMLEKALSLV LKCRANGLMK RVFTIIPAAA
101: FRKMSGQLEN SIGDVSWLLR VSAPAEDRGD AGYLGLPPIA ANEPILCLIW EQIAILYTGS LEDRSDAAAS LVSLARDNDR YTKLIIEEGG VVPLLKLLKE
201: GKPEGQENAA RALGLLGRDP ESVEHMIHGG ACSVFGKVLK EGPMKVQAVV AWATSELVSN HPKCQDVFAQ HNAIRLLVGH LAFETVQEHS KYAIATNNKA
301: TSIHHAVALA KENPNSTSAT ALPKGLDEDQ SSIPHPTGKQ MPNQMHNVVV NTMAVRANPP RKSTSNGVSQ SNGVKQPSSV QQHQNSTSSA SKTRELEDSA
401: TKCQIKAMAA RALWKLAKGN STICKSITES RALLCFAVLI EKGDEEVRYN SAMALMEITA VAEQDADLRR SAFKPNSPAC KAVVDQVLRI IEIADSELLI
501: PCIRTIGNLA RTFRATETRM IGPLVKLLDE REPEVTGEAA AALTKFACTA NYLHKDHSRG IIEAGGGKHL VQLAYFGEGG VQIPALELLC YIALNVPDSE
601: QLAKDEVLAV LEWASKQSWV TQLESLEALL QEAKRGLDLY QQRGSRGYNF N

Arabidopsis Description

ARO2Armadillo repeat only 2 [Source:UniProtKB/TrEMBL;Acc:Q9FKW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.