Factsheet for TraesCS6A01G009200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 20410318
golgi: 25769308
plastid: 26362323

msms PMID: 20410318 doi

A Moolna, CG Bowsher

Michael Smith Building, Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, UK.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

msms PMID: 26362323 doi

X Li, C Hao, J Zhong, F Liu, J Cai, X Wang, Q Zhou, T Dai, W Cao, D Jiang

Faculty of Science, Department of Plant and Environmental Sciences, University of Copenhagen, Højbakkegaard Allé 13, DK-2630, Taastrup, Denmark. fl@plen.ku.dk., Faculty of Science, Department of Plant and Environmental Sciences, University of Copenhagen, Højbakkegaard Allé 13, DK-2630, Taastrup, Denmark. xili@plen.ku.dk., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. 429382882@qq.com., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. caijian@njau.edu.cn., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. caow@njau.edu.cn., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. jiangd@njau.edu.cn., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. kayozhong@163.com., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. qinzhou@njau.edu.cn., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. tingbod@njau.edu.cn., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. xiaowang@njau.edu.cn., National Engineering and Technology Center for Information Agriculture / Key Laboratory of Crop Physiology and Ecology in Southern China, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, 210095, China. xili@plen.ku.dk.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5D01G569800.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G015000.1	Wheat	plastid	92.84	92.84
TraesCS6D01G012200.1	Wheat	plastid, unclear	90.63	91.14
EES04249	Sorghum	plastid	79.89	78.8
VIT_04s0023g03510.t01	Wine grape	plastid	74.93	75.14
Zm00001d011833_P001	Maize	plastid	76.31	75.07
HORVU6Hr1G000620.2	Barley	plastid	82.64	75.0
Os02t0103800-01	Rice	plastid	75.21	74.59
KRH69775	Soybean	plastid	74.38	74.59
KRH08061	Soybean	nucleus, plastid	74.1	74.31
PGSC0003DMT400009192	Potato	extracellular	73.83	74.03
AT5G66190.1	Thale cress	plastid	73.28	73.89
KRH28804	Soybean	plastid	73.55	73.76
GSMUA_Achr11P...	Banana	plastid	72.18	73.18
TraesCS4A01G472500.1	Wheat	plastid	72.73	72.93
CDY18592	Canola	plastid	72.73	72.93
TraesCS7A01G020500.1	Wheat	plastid	72.45	72.85
GSMUA_Achr1P02830_001	Banana	plastid	72.18	72.78
Bra037182.1-P	Field mustard	plastid	72.73	72.73
Solyc02g062130.2.1	Tomato	plastid	72.45	72.65
CDX81408	Canola	plastid	72.18	72.18
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	71.63	71.63
CDY57601	Canola	plastid	69.15	68.39
Bra012203.1-P	Field mustard	plastid	69.15	68.39
Bra016481.1-P	Field mustard	plastid	68.32	68.13
AT1G20020.1	Thale cress	plastid	68.32	67.21
Solyc02g083810.2.1	Tomato	plastid	68.32	67.03
CDY43420	Canola	plastid	66.94	66.76
CDX83730	Canola	plastid	68.87	66.31
CDY62940	Canola	plastid	67.77	66.31
CDY55097	Canola	vacuole	66.12	63.32
GSMUA_Achr8P13460_001	Banana	plastid	72.45	62.32
Zm00001d042049_P001	Maize	plastid	79.34	59.14
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.94	43.93
TraesCS2A01G252800.1	Wheat	plastid	42.15	40.58
TraesCS5A01G423000.1	Wheat	plastid	39.94	38.56
CDY57760	Canola	plastid	71.9	26.0

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	GO:GO:0098807	InterPro:IPR017927	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
EnsemblPlantsGene:TraesCS6A01G009200	EnsemblPlants:TraesCS6A01G009200.1	TIGR:cd06208	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:3851504..3853230

Molecular Weight (calculated)

40235.1 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.407

Length

363 amino acids

Sequence
(BLAST)

001: MAAQLTAALP SYSPATTKAA AGGSSPSSHF LAYPSRPRNV RNGVRAQVST TEPTAEPAPA APAKPVKISK KQDEGVVTNK YRPKEPYVGR CLLNTRLTGD
101: NAPGETWHMV FSTEGEVPYR EGQSIGVIAD GEDKNGKPHK LRLYSIASSA IGDFGDSKTV SLCVKRLVYT NDAGEVVKGV CSNFLCDLKP GSEVKITGPV
201: GKEMLMPKDP NATIIMLATG TGIAPFRSFL WKMFFEEHED YKFNGLAWLF LGVPTSDTLL YKEEFEKMVE IGGENFRLDF AVSREQTNAA GEKMYIQTRM
301: AEYKEELWEM LKKDNTYVYM CGLKGMEKGI DDIMVDLAAK DGIDWIDYKK QLKKAEQWNV EVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.