CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX94134
CDY10819
CDY41285
CDY68977

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	CDX94134	AT4G22890.1	18243102
AT5G66190.1	CDY10819	AT4G22890.1	18243102
AT5G66190.1	CDY41285	AT4G22890.1	18243102
AT5G66190.1	CDY68977	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18592	Canola	plastid	73.88	77.35
CDX81408	Canola	plastid	73.88	77.14
AT5G66190.1	Thale cress	plastid	72.56	76.39
KRH69775	Soybean	plastid	68.07	71.27
KRH08061	Soybean	nucleus, plastid	67.81	70.99
VIT_04s0023g03510.t01	Wine grape	plastid	67.28	70.44
KRH28804	Soybean	plastid	67.28	70.44
GSMUA_Achr11P...	Banana	plastid	65.44	69.27
PGSC0003DMT400009192	Potato	extracellular	65.44	68.51
Solyc02g062130.2.1	Tomato	plastid	64.64	67.68
GSMUA_Achr1P02830_001	Banana	plastid	64.12	67.5
Solyc02g083810.2.1	Tomato	plastid	65.44	67.03
TraesCS6A01G009200.1	Wheat	plastid	63.32	66.12
TraesCS6D01G012200.1	Wheat	plastid, unclear	62.8	65.93
Zm00001d045575_P001	Maize	plastid	61.21	65.35
TraesCS6B01G015000.1	Wheat	plastid	62.53	65.29
Os02t0103800-01	Rice	plastid	62.27	64.48
EES04249	Sorghum	plastid	62.53	64.4
Os06t0107700-01	Rice	plastid	60.95	63.81
TraesCS7D01G016800.1	Wheat	plastid	60.69	63.54
EER89050	Sorghum	plastid	60.42	63.43
TraesCS7A01G020500.1	Wheat	plastid	60.42	63.43
TraesCS4A01G472500.1	Wheat	plastid	60.16	62.98
CDY57601	Canola	plastid	60.69	62.67
Zm00001d011833_P001	Maize	plastid	60.95	62.6
CDY43420	Canola	plastid	58.31	60.71
CDX83730	Canola	plastid	59.37	59.68
CDY62940	Canola	plastid	58.31	59.57
HORVU6Hr1G000620.2	Barley	plastid	62.53	59.25
HORVU7Hr1G002210.8	Barley	plastid	55.67	58.61
GSMUA_Achr8P13460_001	Banana	plastid	64.12	57.58
Zm00001d042049_P001	Maize	plastid	62.27	48.46
CDX83820	Canola	endoplasmic reticulum, plasma membrane	21.11	46.24
CDY39167	Canola	plastid	40.11	40.21
CDY46362	Canola	plastid	39.84	39.95
CDY23149	Canola	endoplasmic reticulum, plastid	17.41	39.52
CDY09570	Canola	plastid	38.79	38.48
CDY51794	Canola	plastid	24.54	38.43
CDY02299	Canola	plastid	38.52	38.22
CDY57760	Canola	plastid	75.73	28.59
CDY40011	Canola	cytosol, mitochondrion, peroxisome	14.78	23.83
CDY20886	Canola	mitochondrion, plastid	11.61	20.37

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	GO:A0A078IXV6	UniProt:A0A078IXV6
EnsemblPlants:CDY55097	ProteinID:CDY55097	ProteinID:CDY55097.1	InterPro:FNR	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00016400001	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361
PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7	MetaCyc:PWY-101	MetaCyc:PWY-7230
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	SignalP:SignalP-noTM	UniParc:UPI0004EE8E96	SEG:seg

Description

BnaA02g34830DFerredoxin--NADP reductase [Source:UniProtKB/TrEMBL;Acc:A0A078IXV6]

Coordinates

chrLK033375:+:34643..36408

Molecular Weight (calculated)

43406.0 Da

IEP (calculated)

8.384

GRAVY (calculated)

-0.173

Length

379 amino acids

Sequence
(BLAST)

001: MIKLVISLLP LLIKHGCCCY RCCSLISIIK VVVVSPHKNI LRWIFLNNES TREACSYGGR VKAQVTTEVP VKVVKESKKQ EEGIVVNKFK PKDPYTGRCL
101: LNTRITGDDA PGETWHIVFT TQGEVPYREG QSIGVIPEGI DKNGKPHKLR LYSIASSAIG DFGDSKTVRA FPPLTKPFFF FEAGCVCLFV VFIFTGDLKP
201: GDEAKITGPV GKEMLMPKDP NATIIMLATG TGIAPFRSFL WKMFFEEHED YKFNGLAWLF LGVPTSSSLL YKEFEKMKEK NPENFRLDFA VSREQTNDKG
301: EKMYIQTRMA EYAQELWELL KKDNTFVYMC GLKGMEKGID EIMVSIHFIF LFLENQTRID WLEYKKQLKR SEQWNVEVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.