Factsheet for TraesCS7D01G016800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 18071923
plastid: 20410318
plastid: 22160430
plastid: 23683508
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 20410318 doi

A Moolna, CG Bowsher

Michael Smith Building, Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, UK.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

msms PMID: 23683508 doi

ZH He, HW Li, Y Shen, ZS Li, H Mi

National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT1G20020.1	TraesCS5D01G569800.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
AT5G66190.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G020500.1	Wheat	plastid	91.44	91.69
HORVU7Hr1G002210.8	Barley	plastid	86.19	86.67
Os06t0107700-01	Rice	plastid	79.83	79.83
EER89050	Sorghum	plastid	77.07	77.29
Zm00001d045575_P001	Maize	plastid	75.69	77.18
GSMUA_Achr11P...	Banana	plastid	74.86	75.7
VIT_04s0023g03510.t01	Wine grape	plastid	75.14	75.14
KRH28804	Soybean	plastid	74.86	74.86
PGSC0003DMT400009192	Potato	extracellular	74.59	74.59
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	74.59	74.38
KRH08061	Soybean	nucleus, plastid	74.31	74.31
KRH69775	Soybean	plastid	73.48	73.48
TraesCS6D01G012200.1	Wheat	plastid, unclear	73.2	73.41
AT5G66190.1	Thale cress	plastid	72.38	72.78
CDY18592	Canola	plastid	72.65	72.65
Solyc02g062130.2.1	Tomato	plastid	72.65	72.65
GSMUA_Achr1P02830_001	Banana	plastid	72.1	72.5
Bra037182.1-P	Field mustard	plastid	72.65	72.45
Bra016481.1-P	Field mustard	plastid	72.65	72.25
Bra012203.1-P	Field mustard	plastid	73.2	72.21
CDX81408	Canola	plastid	72.38	72.18
CDY57601	Canola	plastid	72.65	71.66
AT1G20020.1	Thale cress	plastid	71.82	70.46
CDY43420	Canola	plastid	70.44	70.05
CDY62940	Canola	plastid	71.55	69.81
CDX83730	Canola	plastid	72.1	69.23
Solyc02g083810.2.1	Tomato	plastid	69.89	68.38
GSMUA_Achr8P13460_001	Banana	plastid	75.14	64.45
CDY55097	Canola	vacuole	63.54	60.69
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.72	43.35
TraesCS2D01G253400.1	Wheat	golgi	42.27	40.48
TraesCS5D01G431300.1	Wheat	plastid	40.33	38.83
CDY57760	Canola	plastid	71.27	25.7

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	GO:GO:0098807	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS7D01G016800	EnsemblPlants:TraesCS7D01G016800.1
TIGR:cd06208	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:7446638..7449465

Molecular Weight (calculated)

39909.9 Da

IEP (calculated)

8.427

GRAVY (calculated)

-0.315

Length

362 amino acids

Sequence
(BLAST)

001: MAAVTAAAVS LRAATTTSPS PSSAPQHSHC SFPCAARTAV SRRGLLTVRA QAVSTDAAAA PVKEKKVSKK QEEGVVTNKF RPKEPYVGKC LLNTKITADD
101: APGETWHMVF STEGEVPYKE GQSIGVVADG QDKNGKPHKL RLYSIASSAL GDFGDAKTVS LCVKRLVYTN DAGEVVKGVC SNFLCDLKPG ADVNITGPVG
201: KEMLMPKDPN ATIIMLATGT GIAPFRSFLW KMFFEKYEDY KFNGLAWLFL GVPTSSSLLY PEEFGKMKAK APDNFRVDYA ISREETNAAG EKMYIQTRMA
301: EYKDELWELL KKDNTYVYMC GLKGMEKGID EIMIPLASKE GIDWIDYRKQ LKKSEQWNVE VY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.