Factsheet for GSMUA_Achr8P13460_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12240_001
GSMUA_Achr4P28830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	GSMUA_Achr2P12240_001	AT4G22890.1	18243102
AT5G66190.1	GSMUA_Achr4P28830_001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	75.59	89.11
GSMUA_Achr1P02830_001	Banana	plastid	75.36	88.33
KRH28804	Soybean	plastid	71.33	83.15
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	71.33	82.92
KRH69775	Soybean	plastid	70.85	82.6
VIT_04s0023g03510.t01	Wine grape	plastid	70.62	82.32
KRH08061	Soybean	nucleus, plastid	70.38	82.04
PGSC0003DMT400009192	Potato	extracellular	68.72	80.11
AT5G66190.1	Thale cress	plastid	68.01	79.72
Solyc02g062130.2.1	Tomato	plastid	68.01	79.28
CDY18592	Canola	plastid	67.54	78.73
CDX81408	Canola	plastid	67.54	78.51
Bra037182.1-P	Field mustard	plastid	67.3	78.24
Zm00001d045575_P001	Maize	plastid	64.22	76.34
EER89050	Sorghum	plastid	65.17	76.18
Os06t0107700-01	Rice	plastid	64.93	75.69
Zm00001d011833_P001	Maize	plastid	65.88	75.34
TraesCS7D01G016800.1	Wheat	plastid	64.45	75.14
EES04249	Sorghum	plastid	64.93	74.46
TraesCS7A01G020500.1	Wheat	plastid	63.51	74.24
Solyc02g083810.2.1	Tomato	plastid	64.93	74.05
TraesCS4A01G472500.1	Wheat	plastid	63.51	74.03
TraesCS6D01G012200.1	Wheat	plastid, unclear	63.03	73.68
TraesCS6B01G015000.1	Wheat	plastid	63.03	73.28
TraesCS6A01G009200.1	Wheat	plastid	62.32	72.45
Os02t0103800-01	Rice	plastid	62.32	71.86
HORVU7Hr1G002210.8	Barley	plastid	61.14	71.67
HORVU6Hr1G000620.2	Barley	plastid	63.27	66.75
CDY55097	Canola	vacuole	57.58	64.12
Zm00001d042049_P001	Maize	plastid	65.17	56.47
CDX83820	Canola	endoplasmic reticulum, plasma membrane	18.72	45.66
GSMUA_Achr4P31670_001	Banana	plastid	38.15	42.26
GSMUA_Achr4P28350_001	Banana	plastid	36.26	41.02
CDY57760	Canola	plastid	67.54	28.39

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G13460_001	EnsemblPlants:GSMUA_Achr8P13460_001	EnsemblPlants:GSMUA_Achr8T13460_001
InterPro:IPR017927	UniProt:M0TQ49	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178
PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI000296A9AF	SEG:seg	:	:	:

Description

Ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G13460_001]

Coordinates

chr8:+:10197333..10199394

Molecular Weight (calculated)

46569.2 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.252

Length

422 amino acids

Sequence
(BLAST)

001: MIHSKCTPTT SFPSPISTNH LNLPILPPHP FLLLLPTSLS PKALLLLPQK TWAMASAAVT AAVGSLPSSK SSSLSKTPSI SPATLERTSF HKACLYSRSV
101: STANARKKLV AVRAQVTTEA PAKVAKVSKK NDEGVVTNKY KPKEPYVGTC LLNTKITGDD APGETWHMVF STEGEVPYRE GQSIGVIADG IDKNGKPHKL
201: RLYSIASSAL GDFGDAKTVS LCVKRLVYTN EQGEVVKGVC SNFLCDLKPG AEVKITGPVG KEMLMPKDPN ATVIMLGTGT GIAPFRSFLW KMFFEKHDDY
301: EFNGLAWLFL GVPTSSSLLY KEEFEKMKER APDNFRVDYA VSREQANEKG EKMYIQTRMA EYAGELWELL KKDNTFVYMC GLKGMEKGID DIMVSLAAND
401: GIDWLSYKRE LKRAEQWNVE VY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.