Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
21734114
|
plastid:
17189339
nucleus: 19621931 nucleus: 24133045 extracellular: 25047395 plastid: 27126603 plasma membrane: 27800704 extracellular: 28232208 |
gfp PMID:
21734114
doi
Plant Functional Genomics Research Group, RIKEN, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
25047395
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID:
17189339
doi
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID:
27126603
doi
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os03t0857400-01 | |
Os08t0310500-00 | |
Os08t0526300-02 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6B01G015000.1 | Wheat | plastid | 75.68 | 76.31 |
TraesCS6D01G012200.1 | Wheat | plastid, unclear | 74.86 | 75.9 |
TraesCS6A01G009200.1 | Wheat | plastid | 74.59 | 75.21 |
Os06t0107700-01 | Rice | plastid | 74.32 | 75.14 |
EES04249 | Sorghum | plastid | 75.14 | 74.73 |
GSMUA_Achr11P... | Banana | plastid | 72.95 | 74.58 |
GSMUA_Achr1P02830_001 | Banana | plastid | 72.95 | 74.17 |
KRH69775 | Soybean | plastid | 72.95 | 73.76 |
AT5G66190.1 | Thale cress | plastid | 72.4 | 73.61 |
CDX81408 | Canola | plastid | 72.95 | 73.55 |
CDY18592 | Canola | plastid | 72.4 | 73.2 |
KRH08061 | Soybean | nucleus, plastid | 72.4 | 73.2 |
VIT_04s0023g03510.t01 | Wine grape | plastid | 72.13 | 72.93 |
Bra037182.1-P | Field mustard | plastid | 72.13 | 72.73 |
KRH28804 | Soybean | plastid | 71.86 | 72.65 |
VIT_18s0001g14450.t01 | Wine grape | cytosol, plastid | 71.86 | 72.45 |
Zm00001d011833_P001 | Maize | plastid | 72.95 | 72.36 |
Solyc02g062130.2.1 | Tomato | plastid | 71.31 | 72.1 |
PGSC0003DMT400009192 | Potato | extracellular | 71.04 | 71.82 |
CDY57601 | Canola | plastid | 68.58 | 68.39 |
AT1G20020.1 | Thale cress | plastid | 68.85 | 68.29 |
Bra016481.1-P | Field mustard | plastid | 67.76 | 68.13 |
Bra012203.1-P | Field mustard | plastid | 68.31 | 68.12 |
HORVU6Hr1G000620.2 | Barley | plastid | 74.04 | 67.75 |
CDY43420 | Canola | plastid | 66.39 | 66.76 |
CDX83730 | Canola | plastid | 68.03 | 66.05 |
CDY62940 | Canola | plastid | 66.94 | 66.04 |
Solyc02g083810.2.1 | Tomato | plastid | 65.85 | 65.14 |
GSMUA_Achr8P13460_001 | Banana | plastid | 71.86 | 62.32 |
CDY55097 | Canola | vacuole | 64.48 | 62.27 |
Zm00001d042049_P001 | Maize | plastid | 74.86 | 56.26 |
CDX83820 | Canola | endoplasmic reticulum, plasma membrane | 21.04 | 44.51 |
Os07t0147900-01 | Rice | plastid | 42.08 | 40.74 |
Os03t0784700-01 | Rice | plastid | 40.44 | 39.15 |
CDY57760 | Canola | plastid | 71.58 | 26.1 |
Os02t0103600-01 | Rice | plasma membrane | 12.02 | 12.46 |
Protein Annotations
KEGG:00195+1.18.1.2 | MapMan:1.1.5.2.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.80 | EntrezGene:4328000 | EMBL:AK065309 |
ProteinID:BAD07827.1 | ProteinID:BAS76543.1 | ProteinID:EAZ21407.1 | InterPro:FNR | InterPro:FNR_plant_Cyanobacteria | InterPro:Fd_Rdtase_FAD-bd |
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004324 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009987 |
GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016491 | GO:GO:0055114 | GO:GO:0098807 | InterPro:IPR017927 |
EnsemblPlantsGene:Os02g0103800 | EnsemblPlants:Os02t0103800-01 | InterPro:OxRdtase_FAD/NAD-bd | PFAM:PF00175 | PIRSF:PIRSF000361 | PIRSF:PIRSF501178 |
PRINTS:PR00371 | PFscan:PS51384 | PANTHER:PTHR43314 | PANTHER:PTHR43314:SF3 | UniProt:Q6ZFJ3 | InterPro:Riboflavin_synthase-like_b-brl |
SUPFAM:SSF52343 | SUPFAM:SSF63380 | UniParc:UPI000023680A | RefSeq:XP_015625198.1 | SEG:seg | : |
Description
leaf-type ferredoxin-NADP+-oxidoreductase 1, leaf-type FNR 1, Fd NADP+ oxidoreductase 1Leaf-type ferredoxin-NADP+-oxidoreductase, Regulation of electron partitioning in the chloroplast (Os02t0103800-01);Similar to Ferredoxin NADP+ reductase (EC 1.18.1.2) (Fragment). (Os02t0103800-02);Similar to Ferredoxin--NADP reductase. (Os02t0103800-03)
Coordinates
chr2:-:183655..185325
Molecular Weight (calculated)
40666.7 Da
IEP (calculated)
7.955
GRAVY (calculated)
-0.383
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVNTVSSL PCSKAGAAVA GGAPRPSTCS VFYPPRCWSK RSSGNGVRAQ ASTTETTAAP AAEVTTKVEK VSKKQVDGVV TNKYRPKEPY TGRCLLNTRI
101: TGDDAPGETW HMVFSTDGEI PYREGQSIGV IPDGIDKNGK PHKLRLYSIA SSAIGDFADS KTVSLCVKRL VYTNDQGEIV KGVCSNFLCD LKPGSDVKIT
201: GPVGKEMLMP KDPNATIIML GTGTGIAPFR SFLWKMFFEE HDDYKFNGLA WLFLGVPTSS TLLYREEFER MKEIAPERFR LDFAVSREQT NAAGEKMYIQ
301: TRMAEYKDEL WELLKKDNTY VYMCGLKGME KGIDDIMIDL AAKDGIDWLD YKKQLKKSEQ WNVEVY
101: TGDDAPGETW HMVFSTDGEI PYREGQSIGV IPDGIDKNGK PHKLRLYSIA SSAIGDFADS KTVSLCVKRL VYTNDQGEIV KGVCSNFLCD LKPGSDVKIT
201: GPVGKEMLMP KDPNATIIML GTGTGIAPFR SFLWKMFFEE HDDYKFNGLA WLFLGVPTSS TLLYREEFER MKEIAPERFR LDFAVSREQT NAAGEKMYIQ
301: TRMAEYKDEL WELLKKDNTY VYMCGLKGME KGIDDIMIDL AAKDGIDWLD YKKQLKKSEQ WNVEVY
001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY
Arabidopsis Description
LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.