Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 21734114
plastid: 17189339
nucleus: 19621931
nucleus: 24133045
extracellular: 25047395
plastid: 27126603
plasma membrane: 27800704
extracellular: 28232208
gfp PMID: 21734114 doi
M Higuchi-Takeuchi, T Ichikawa, Y Kondou, K Matsui, Y Hasegawa, M Kawashima, K Sonoike, M Mori, H Hirochika, M Matsui
Plant Functional Genomics Research Group, RIKEN, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 27126603 doi
Y Wang, K Ji, S Shen, H Chen
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G015000.1 Wheat plastid 75.68 76.31
TraesCS6D01G012200.1 Wheat plastid, unclear 74.86 75.9
TraesCS6A01G009200.1 Wheat plastid 74.59 75.21
Os06t0107700-01 Rice plastid 74.32 75.14
EES04249 Sorghum plastid 75.14 74.73
GSMUA_Achr11P... Banana plastid 72.95 74.58
GSMUA_Achr1P02830_001 Banana plastid 72.95 74.17
KRH69775 Soybean plastid 72.95 73.76
AT5G66190.1 Thale cress plastid 72.4 73.61
CDX81408 Canola plastid 72.95 73.55
CDY18592 Canola plastid 72.4 73.2
KRH08061 Soybean nucleus, plastid 72.4 73.2
VIT_04s0023g03510.t01 Wine grape plastid 72.13 72.93
Bra037182.1-P Field mustard plastid 72.13 72.73
KRH28804 Soybean plastid 71.86 72.65
VIT_18s0001g14450.t01 Wine grape cytosol, plastid 71.86 72.45
Zm00001d011833_P001 Maize plastid 72.95 72.36
Solyc02g062130.2.1 Tomato plastid 71.31 72.1
PGSC0003DMT400009192 Potato extracellular 71.04 71.82
CDY57601 Canola plastid 68.58 68.39
AT1G20020.1 Thale cress plastid 68.85 68.29
Bra016481.1-P Field mustard plastid 67.76 68.13
Bra012203.1-P Field mustard plastid 68.31 68.12
HORVU6Hr1G000620.2 Barley plastid 74.04 67.75
CDY43420 Canola plastid 66.39 66.76
CDX83730 Canola plastid 68.03 66.05
CDY62940 Canola plastid 66.94 66.04
Solyc02g083810.2.1 Tomato plastid 65.85 65.14
GSMUA_Achr8P13460_001 Banana plastid 71.86 62.32
CDY55097 Canola vacuole 64.48 62.27
Zm00001d042049_P001 Maize plastid 74.86 56.26
CDX83820 Canola endoplasmic reticulum, plasma membrane 21.04 44.51
Os07t0147900-01 Rice plastid 42.08 40.74
Os03t0784700-01 Rice plastid 40.44 39.15
CDY57760 Canola plastid 71.58 26.1
Os02t0103600-01 Rice plasma membrane 12.02 12.46
Protein Annotations
KEGG:00195+1.18.1.2MapMan:1.1.5.2.1Gene3D:2.40.30.10Gene3D:3.40.50.80EntrezGene:4328000EMBL:AK065309
ProteinID:BAD07827.1ProteinID:BAS76543.1ProteinID:EAZ21407.1InterPro:FNRInterPro:FNR_plant_CyanobacteriaInterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_RdtaseGO:GO:0003674GO:GO:0003824GO:GO:0004324GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009987
GO:GO:0015979GO:GO:0016020GO:GO:0016491GO:GO:0055114GO:GO:0098807InterPro:IPR017927
EnsemblPlantsGene:Os02g0103800EnsemblPlants:Os02t0103800-01InterPro:OxRdtase_FAD/NAD-bdPFAM:PF00175PIRSF:PIRSF000361PIRSF:PIRSF501178
PRINTS:PR00371PFscan:PS51384PANTHER:PTHR43314PANTHER:PTHR43314:SF3UniProt:Q6ZFJ3InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52343SUPFAM:SSF63380UniParc:UPI000023680ARefSeq:XP_015625198.1SEG:seg:
Description
leaf-type ferredoxin-NADP+-oxidoreductase 1, leaf-type FNR 1, Fd NADP+ oxidoreductase 1Leaf-type ferredoxin-NADP+-oxidoreductase, Regulation of electron partitioning in the chloroplast (Os02t0103800-01);Similar to Ferredoxin NADP+ reductase (EC 1.18.1.2) (Fragment). (Os02t0103800-02);Similar to Ferredoxin--NADP reductase. (Os02t0103800-03)
Coordinates
chr2:-:183655..185325
Molecular Weight (calculated)
40666.7 Da
IEP (calculated)
7.955
GRAVY (calculated)
-0.383
Length
366 amino acids
Sequence
(BLAST)
001: MAAVNTVSSL PCSKAGAAVA GGAPRPSTCS VFYPPRCWSK RSSGNGVRAQ ASTTETTAAP AAEVTTKVEK VSKKQVDGVV TNKYRPKEPY TGRCLLNTRI
101: TGDDAPGETW HMVFSTDGEI PYREGQSIGV IPDGIDKNGK PHKLRLYSIA SSAIGDFADS KTVSLCVKRL VYTNDQGEIV KGVCSNFLCD LKPGSDVKIT
201: GPVGKEMLMP KDPNATIIML GTGTGIAPFR SFLWKMFFEE HDDYKFNGLA WLFLGVPTSS TLLYREEFER MKEIAPERFR LDFAVSREQT NAAGEKMYIQ
301: TRMAEYKDEL WELLKKDNTY VYMCGLKGME KGIDDIMIDL AAKDGIDWLD YKKQLKKSEQ WNVEVY
Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)
001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY
Arabidopsis Description
LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.