CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG34948
KXG37086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	KXG34948	AT4G22890.1	18243102
AT1G20020.1	KXG37086	AT4G22890.1	18243102
AT5G66190.1	KXG34948	AT4G22890.1	18243102
AT5G66190.1	KXG37086	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011833_P001	Maize	plastid	86.41	86.18
TraesCS6D01G012200.1	Wheat	plastid, unclear	79.89	81.44
TraesCS6B01G015000.1	Wheat	plastid	79.08	80.17
TraesCS6A01G009200.1	Wheat	plastid	78.8	79.89
EER89050	Sorghum	plastid	76.09	77.56
VIT_04s0023g03510.t01	Wine grape	plastid	76.09	77.35
KRH69775	Soybean	plastid	75.54	76.8
KRH08061	Soybean	nucleus, plastid	75.54	76.8
GSMUA_Achr11P...	Banana	plastid	74.46	76.54
KRH28804	Soybean	plastid	75.27	76.52
AT5G66190.1	Thale cress	plastid	74.73	76.39
GSMUA_Achr1P02830_001	Banana	plastid	74.73	76.39
CDX81408	Canola	plastid	75.0	76.03
CDY18592	Canola	plastid	74.73	75.97
PGSC0003DMT400009192	Potato	extracellular	74.73	75.97
Bra037182.1-P	Field mustard	plastid	74.73	75.76
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	74.46	75.48
Solyc02g062130.2.1	Tomato	plastid	74.18	75.41
Os02t0103800-01	Rice	plastid	74.73	75.14
HORVU6Hr1G000620.2	Barley	plastid	78.8	72.5
Bra016481.1-P	Field mustard	plastid	69.57	70.33
CDY57601	Canola	plastid	69.84	70.03
AT1G20020.1	Thale cress	plastid	70.11	69.92
Bra012203.1-P	Field mustard	plastid	69.57	69.75
CDY43420	Canola	plastid	68.21	68.96
Solyc02g083810.2.1	Tomato	plastid	69.29	68.92
CDY62940	Canola	plastid	68.75	68.19
CDX83730	Canola	plastid	69.84	68.17
GSMUA_Achr8P13460_001	Banana	plastid	74.46	64.93
Zm00001d042049_P001	Maize	plastid	84.78	64.07
CDY55097	Canola	vacuole	64.4	62.53
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.65	43.93
OQU88435	Sorghum	plastid	44.57	43.04
EER90782	Sorghum	plastid	43.21	41.84
CDY57760	Canola	plastid	72.55	26.59

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	EntrezGene:8077380	UniProt:C5XIJ3
EnsemblPlants:EES04249	ProteinID:EES04249	ProteinID:EES04249.1	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	GO:GO:0098807	InterPro:IPR017927
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384
PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	MetaCyc:PWY-101	MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3003G431700
SUPFAM:SSF52343	SUPFAM:SSF63380	unigene:Sbi.14051	UniParc:UPI0001A857AA	RefSeq:XP_002459129.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:73421119..73424110

Molecular Weight (calculated)

40997.1 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.420

Length

368 amino acids

Sequence
(BLAST)

001: MAAVTAAAVS LSSSSSPAAA AAKAKAAASP SSPCSHLQFL SLYPQRRTRA VRMRVQVSST ETAEAEAVKK EKVSKKQDEG VVTNKYRPKE PYVGRCLSNT
101: RITGDDAPGE TWHMVFSTEG EVPYREGQSI GIIADGEDKN GKPHKLRLYS IASSALGDFG DSKTVSLCVK RLVYTNDQGE IVKGVCSNFL CDLKPGSEVK
201: ITGPVGKEML MPKDPNATII MLATGTGIAP FRSFLWKMFF EEHEDYKYTG LAWLFLGVPT SDTLLYKEEL EKMKEMAPEN FRLDFAVSRE QTNAAGEKMY
301: IQTRMAEYKE ELWELLKKDN TYVYMCGLKG MEKGIDDIMV DLAAKDGIDW MEYKKQLKKG EQWNVEVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.