CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034345_P001	Maize	plastid	95.26	92.35
Os03t0784700-01	Rice	plastid	85.79	86.24
TraesCS5A01G423000.1	Wheat	plastid	83.68	84.57
TraesCS5D01G431300.1	Wheat	plastid	82.89	83.78
TraesCS5B01G424900.1	Wheat	plastid	81.05	82.57
KRH11782	Soybean	nucleus, plastid	80.26	80.9
GSMUA_Achr4P28350_001	Banana	plastid	79.21	80.7
KRH36793	Soybean	plastid	79.47	80.11
HORVU5Hr1G103180.1	Barley	plastid	81.05	79.79
OQU88435	Sorghum	plastid	79.74	79.53
GSMUA_Achr4P31670_001	Banana	plastid	79.21	79.0
VIT_10s0003g04880.t01	Wine grape	plastid	78.16	78.78
Solyc02g024050.2.1	Tomato	extracellular	76.05	77.27
PGSC0003DMT400010484	Potato	plastid	75.79	77.01
PGSC0003DMT400030830	Potato	extracellular, plastid	75.53	76.74
CDY46362	Canola	plastid	75.79	76.19
Bra029574.1-P	Field mustard	plastid	75.79	76.19
CDY39167	Canola	plastid	75.79	76.19
AT1G30510.2	Thale cress	plastid	76.32	75.92
AT4G05390.1	Thale cress	plastid	74.74	75.13
CDY09570	Canola	plastid	75.53	75.13
CDY02299	Canola	plastid	75.0	74.61
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	75.0	68.18
CDY51794	Canola	plastid	40.79	64.05
EES04249	Sorghum	plastid	41.84	43.21
EER89050	Sorghum	plastid	39.47	41.55
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.74	40.0
CDY20886	Canola	mitochondrion, plastid	22.11	38.89

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	EntrezGene:8083923	UniProt:C5WY84
ncoils:Coil	EnsemblPlants:EER90782	ProteinID:EER90782	ProteinID:EER90782.1	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF4
MetaCyc:PWY-101	MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3001G067100	SUPFAM:SSF52343	SUPFAM:SSF63380
unigene:Sbi.863	UniParc:UPI0001A82203	RefSeq:XP_002463784.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:5084280..5087994

Molecular Weight (calculated)

41889.7 Da

IEP (calculated)

8.843

GRAVY (calculated)

-0.516

Length

380 amino acids

Sequence
(BLAST)

001: MAPAAAASRV AVSSPVFGSD GGARSSGIKG NNNVSFGNKS WVGGTLAWES SSVRPRHVNK VLCMSVQQAS KSKVSVAPLD LESAKEPPLN TYKPKEPFTA
101: TIVSVERLVG PKAPGETCHI VIDHGGNVPY WEGQSYGVIP PGENPKKPGA PQNVRLYSIA STRYGDYFDG RTGSLCVRRA VYYDPETGKE EPSKNGVCSN
201: FLCNSKPGDK IQLTGPSGKI MLLPEEDPNA THIMIATGTG VAPFRGYLRR MFMEDVPNYR FGGLAWLFLG VANSDSLLYD EEFTSYLKQY PDNFRYDKAL
301: SREQKNRSGG KMYVQDKIEE YSDEIFKLLD GGAHIYFCGL KGMMPGIQDT LKKVAEQRGE SWDQKLSQLK KNKQWHVEVY

Best Arabidopsis Sequence Match ( AT1G30510.2 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKQN NSISFNSKSW SSSLALNQKT TSIRDGKRYP STTICMSVQQ TSSSKVTVSP IELEDPKDPP LNLYKPKESY
101: TAKIVSVERV VGPKAPGETC HIVIDHDGNL PYWEGQSYGV IPPGENPKKP GAPHNVRLYS IASTRYGDFF DGKTASLCVR RAVYYDPETG KEDPSKNGVC
201: SNFLCDSKPG DKIQITGPSG KVMLLPESDP NATHIMIATG TGVAPYRGYL RRMFMENVPN KTFSGLAWLF LGVANTDSLL YDEEFTKYLK DHPDNFRFDK
301: ALSREEKNKK GGKMYVQDKI EEYSDEIFKL LDNGAHIYFC GLKGMMPGIQ DTLKRVAEER GESWDLKLSQ LRKNKQWHVE VY

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.