Factsheet for PGSC0003DMT400010484

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030830	Potato	extracellular, plastid	94.65	94.65
Solyc02g024050.2.1	Tomato	extracellular	93.32	93.32
KRH11782	Soybean	nucleus, plastid	82.62	81.96
KRH36793	Soybean	plastid	81.82	81.17
VIT_10s0003g04880.t01	Wine grape	plastid	79.95	79.31
GSMUA_Achr4P28350_001	Banana	plastid	78.34	78.55
AT4G05390.1	Thale cress	plastid	78.34	77.51
Os07t0147900-01	Rice	plastid	78.34	77.51
CDY46362	Canola	plastid	78.07	77.25
AT1G30510.2	Thale cress	plastid	78.88	77.23
Bra029574.1-P	Field mustard	plastid	77.81	76.98
CDY39167	Canola	plastid	77.81	76.98
GSMUA_Achr4P31670_001	Banana	plastid	78.34	76.9
CDY09570	Canola	plastid	78.07	76.44
CDY02299	Canola	plastid	77.54	75.92
EER90782	Sorghum	plastid	77.01	75.79
OQU88435	Sorghum	plastid	76.74	75.33
Os03t0784700-01	Rice	plastid	75.67	74.87
TraesCS2A01G252800.1	Wheat	plastid	75.4	74.8
TraesCS2D01G253400.1	Wheat	golgi	75.4	74.6
TraesCS5B01G424900.1	Wheat	plastid	73.26	73.46
TraesCS5D01G431300.1	Wheat	plastid	73.8	73.4
Zm00001d034345_P001	Maize	plastid	76.74	73.21
TraesCS5A01G423000.1	Wheat	plastid	73.26	72.87
HORVU5Hr1G103180.1	Barley	plastid	73.26	70.98
Zm00001d018794_P003	Maize	plastid	76.2	70.54
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	77.27	69.14
HORVU2Hr1G038830.1	Barley	plastid	76.2	66.28
CDY51794	Canola	plastid	41.18	63.64
TraesCS2B01G272500.1	Wheat	plastid	35.56	60.45
PGSC0003DMT400009192	Potato	extracellular	42.78	44.2
CDY20886	Canola	mitochondrion, plastid	23.53	40.74
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.87	39.57

Protein Annotations

KEGG:00195+1.18.1.2	EntrezGene:102579187	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	ncoils:Coil
InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927
UniProt:M0ZY47	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	EnsemblPlantsGene:PGSC0003DMG400004095	PGSC:PGSC0003DMG400004095	EnsemblPlants:PGSC0003DMT400010484
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0002954F29	RefSeq:XP_006344529.1	:

Description

Ferredoxin--NADP reductase, root-type isozyme, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400004095]

Coordinates

chr7:+:11062851..11070929

Molecular Weight (calculated)

41712.8 Da

IEP (calculated)

8.585

GRAVY (calculated)

-0.457

Length

374 amino acids

Sequence
(BLAST)

001: MAHSAISQVS VAVPLQTDSS FRRSTFKATS LTFSDKLCIS MPSIDLKAAR SRSQYIVCMS VQQASKAKVS VSPLSLEDAK EPPLNIYKPK EPYTATIVSV
101: ERIVGPKAPG ETCHIVIDHD GNLPYWEGQS YGVVPPGENP KKPGSPHNVR LYSIASTRYG DSFDGKTASL CVRRAVYYDP ETGKEDPSKN GVCSNFLCNA
201: KPGDKVKITG PSGKIMLLPE DNLNATHIMI GTGTGVAPFR GYLRRMFMES VPIKFNGLAW LFLGVANTDS LLYDDEFTKY LSDYPGNFRY DRALSREQKN
301: NKGGKMYVQD KIEEYSDEIF KLLDEGAHIY FCGLKGMMPG IQDTLKRVAE ERGESWEQKL SQLKKNKQWH VEVY

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.