CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36793	Soybean	plastid	92.57	92.57
VIT_10s0003g04880.t01	Wine grape	plastid	84.62	84.62
PGSC0003DMT400010484	Potato	plastid	81.96	82.62
PGSC0003DMT400030830	Potato	extracellular, plastid	81.96	82.62
Solyc02g024050.2.1	Tomato	extracellular	80.9	81.55
GSMUA_Achr4P28350_001	Banana	plastid	80.64	81.5
EER90782	Sorghum	plastid	80.9	80.26
Os07t0147900-01	Rice	plastid	80.37	80.16
CDY09570	Canola	plastid	80.64	79.58
OQU88435	Sorghum	plastid	79.84	79.0
GSMUA_Achr4P31670_001	Banana	plastid	79.84	79.0
CDY46362	Canola	plastid	79.05	78.84
CDY39167	Canola	plastid	79.05	78.84
Bra029574.1-P	Field mustard	plastid	78.78	78.57
AT1G30510.2	Thale cress	plastid	79.58	78.53
CDY02299	Canola	plastid	79.31	78.27
Os03t0784700-01	Rice	plastid	78.25	78.04
TraesCS2A01G252800.1	Wheat	plastid	77.98	77.98
TraesCS2D01G253400.1	Wheat	golgi	77.98	77.78
AT4G05390.1	Thale cress	plastid	77.72	77.51
Zm00001d034345_P001	Maize	plastid	80.37	77.3
TraesCS5D01G431300.1	Wheat	plastid	76.66	76.86
TraesCS5B01G424900.1	Wheat	plastid	75.33	76.14
TraesCS5A01G423000.1	Wheat	plastid	75.6	75.8
Zm00001d018794_P003	Maize	plastid	79.31	74.01
HORVU5Hr1G103180.1	Barley	plastid	75.07	73.32
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	79.31	71.53
HORVU2Hr1G038830.1	Barley	plastid	78.25	68.6
CDY51794	Canola	plastid	43.24	67.36
TraesCS2B01G272500.1	Wheat	plastid	38.2	65.45
KRH28804	Soybean	plastid	44.03	45.86
KRH08061	Soybean	nucleus, plastid	44.03	45.86
KRH69775	Soybean	plastid	43.5	45.3
CDY40011	Canola	cytosol, mitochondrion, peroxisome	25.99	41.7
CDY20886	Canola	mitochondrion, plastid	23.61	41.2
KRH76652	Soybean	cytosol, peroxisome, plastid	7.96	37.5

Protein Annotations

KEGG:00195+1.18.1.2	EntrezGene:100807968	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	EMBL:ACUP02009238
EMBL:BT097512	UniProt:C6TIM5	ncoils:Coil	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	EnsemblPlantsGene:GLYMA_15G130100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	EnsemblPlants:KRH11782	ProteinID:KRH11782
ProteinID:KRH11782.1	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6	MetaCyc:PWY-101	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI0000F35DB8	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:10444800..10452430

Molecular Weight (calculated)

42193.4 Da

IEP (calculated)

8.507

GRAVY (calculated)

-0.477

Length

377 amino acids

Sequence
(BLAST)

001: MAHLALSQMA VTVPVGNDLS LRRSAVKAPN LNFWDKSWAP VFTLDLKPNN PSLRSRHVVC MSVQQASVSK VNVSPLELED AKEPPLNLYK PKEPYTATIV
101: SVDRLVGPKA PGETCHIVID HGGNVPYWEG QSYGVIPPGE NPKKPGAPHN VRLYSIASTR YGDFFDGKTA SLCVRRAVYY DPETGKEDPS KNGICSNFLC
201: NSKPGDKIQI TGPSGKIMLL PEDDPNATHI MIATGTGVAP FRGYLRRMFM ESVPAYKFGG LAWLFLGVAN TDSLLYDDEF SKYLKDYPDN FRYNRALSRE
301: QKNKSGGKMY VQDKIEEYSD EIFKLLDNGA HIYFCGLKGM MPGIQDTLKK VAEQRGESWE EKLSQLKKNK QWHVEVY

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.