Factsheet for Zm00001d034345_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90782	Sorghum	plastid	92.35	95.26
Os03t0784700-01	Rice	plastid	81.12	84.13
TraesCS5A01G423000.1	Wheat	plastid	80.61	84.04
TraesCS5D01G431300.1	Wheat	plastid	79.34	82.71
TraesCS5B01G424900.1	Wheat	plastid	77.81	81.77
KRH11782	Soybean	nucleus, plastid	77.3	80.37
GSMUA_Achr4P28350_001	Banana	plastid	76.28	80.16
KRH36793	Soybean	plastid	76.02	79.05
HORVU5Hr1G103180.1	Barley	plastid	77.3	78.5
VIT_10s0003g04880.t01	Wine grape	plastid	75.26	78.25
GSMUA_Achr4P31670_001	Banana	plastid	76.02	78.22
PGSC0003DMT400010484	Potato	plastid	73.21	76.74
Solyc02g024050.2.1	Tomato	extracellular	73.21	76.74
Bra029574.1-P	Field mustard	plastid	73.72	76.45
CDY46362	Canola	plastid	73.72	76.45
PGSC0003DMT400030830	Potato	extracellular, plastid	72.7	76.2
CDY39167	Canola	plastid	73.47	76.19
AT1G30510.2	Thale cress	plastid	73.98	75.92
Zm00001d018794_P003	Maize	plastid	77.04	74.75
AT4G05390.1	Thale cress	plastid	71.94	74.6
CDY09570	Canola	plastid	72.45	74.35
CDY02299	Canola	plastid	71.94	73.82
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	71.94	67.46
CDY51794	Canola	plastid	40.05	64.88
Zm00001d045575_P001	Maize	plastid	38.78	42.82
Zm00001d011833_P001	Maize	plastid	40.05	42.55
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.49	40.85
CDY20886	Canola	mitochondrion, plastid	21.43	38.89
Zm00001d023296_P002	Maize	plastid	21.17	33.47
Zm00001d042049_P001	Maize	plastid	39.54	31.83
Zm00001d005458_P003	Maize	plastid	15.56	30.05
Zm00001d034099_P002	Maize	plastid	26.53	28.11

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	EntrezGene:542713	UniProt:A0A1D6L6S3
ncoils:Coil	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114
InterPro:IPR017927	ProteinID:ONM09999.1	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178
PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF4	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI0008438866	EnsemblPlantsGene:Zm00001d034345	EnsemblPlants:Zm00001d034345_P001	EnsemblPlants:Zm00001d034345_T001	SEG:seg

Description

ferredoxin NADP reductase1Ferredoxin--NADP reductase root isozyme 1 chloroplastic

Coordinates

chr1:-:290272584..290276056

Molecular Weight (calculated)

43042.0 Da

IEP (calculated)

8.890

GRAVY (calculated)

-0.471

Length

392 amino acids

Sequence
(BLAST)

001: MATAAAASRV AVSAPVFGSD GGARSSGIKG NNNVSFGSKS WVGGTLAWES SCSVRPRRAS KVLCMSVQQA SRSKVSVAPL HLESAKEPPL NTYKPKEPFT
101: ATIVSVESLV GPKAPGETCH IVIDHGGNVP YWEGQSYGVI PPGENPKKPG APQNVRLYSI ASTRYGDNFD GRTGSLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCNSKPGD KIQLTAGSFS YDFMTSGPSG KIMLLPEEDP NATHIMIATG TGVAPFRGYL RRMFMEDVPN YRFGGLAWLF LGVANSDSLL YDEEFTSYLK
301: QYPDNFRYDK ALSREQKNRS GGKMYVQDKI EEYSDEIFKL LDGGAHIYFC GLKGMMPGIQ DTLKKVAERR GESWDQKLAQ LKKNKQWHVE VY

Best Arabidopsis Sequence Match ( AT1G30510.2 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKQN NSISFNSKSW SSSLALNQKT TSIRDGKRYP STTICMSVQQ TSSSKVTVSP IELEDPKDPP LNLYKPKESY
101: TAKIVSVERV VGPKAPGETC HIVIDHDGNL PYWEGQSYGV IPPGENPKKP GAPHNVRLYS IASTRYGDFF DGKTASLCVR RAVYYDPETG KEDPSKNGVC
201: SNFLCDSKPG DKIQITGPSG KVMLLPESDP NATHIMIATG TGVAPYRGYL RRMFMENVPN KTFSGLAWLF LGVANTDSLL YDEEFTKYLK DHPDNFRFDK
301: ALSREEKNKK GGKMYVQDKI EEYSDEIFKL LDNGAHIYFC GLKGMMPGIQ DTLKRVAEER GESWDLKLSQ LRKNKQWHVE VY

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.