Factsheet for Bra029574.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46362	Canola	plastid	99.47	99.47
CDY39167	Canola	plastid	97.88	97.88
AT4G05390.1	Thale cress	plastid	91.53	91.53
KRH11782	Soybean	nucleus, plastid	78.57	78.78
Solyc02g024050.2.1	Tomato	extracellular	77.51	78.34
PGSC0003DMT400010484	Potato	plastid	76.98	77.81
PGSC0003DMT400030830	Potato	extracellular, plastid	76.72	77.54
KRH36793	Soybean	plastid	77.25	77.45
Os07t0147900-01	Rice	plastid	76.72	76.72
VIT_10s0003g04880.t01	Wine grape	plastid	75.93	76.13
GSMUA_Achr4P28350_001	Banana	plastid	74.87	75.87
EER90782	Sorghum	plastid	76.19	75.79
OQU88435	Sorghum	plastid	75.4	74.8
GSMUA_Achr4P31670_001	Banana	plastid	75.13	74.54
TraesCS2A01G252800.1	Wheat	plastid	73.55	73.74
Zm00001d034345_P001	Maize	plastid	76.45	73.72
TraesCS2D01G253400.1	Wheat	golgi	73.55	73.55
Os03t0784700-01	Rice	plastid	73.28	73.28
TraesCS5A01G423000.1	Wheat	plastid	72.75	73.14
TraesCS5D01G431300.1	Wheat	plastid	72.75	73.14
TraesCS5B01G424900.1	Wheat	plastid	71.96	72.92
HORVU5Hr1G103180.1	Barley	plastid	71.43	69.95
Zm00001d018794_P003	Maize	plastid	74.07	69.31
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	76.45	69.14
HORVU2Hr1G038830.1	Barley	plastid	74.6	65.58
TraesCS2B01G272500.1	Wheat	plastid	34.39	59.09
Bra037182.1-P	Field mustard	plastid	43.39	45.18
Bra012203.1-P	Field mustard	plastid	42.06	43.32
Bra016481.1-P	Field mustard	plastid	41.53	43.13
Bra012057.1-P	Field mustard	plastid	18.52	40.0

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	EnsemblPlantsGene:Bra029574	EnsemblPlants:Bra029574.1
EnsemblPlants:Bra029574.1-P	ncoils:Coil	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	UniProt:M4ELA6	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF6	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI00025425A9	SEG:seg

Description

AT4G05390 (E=2e-189) ATRFNR1 | ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase

Coordinates

chrA09:-:16928033..16929650

Molecular Weight (calculated)

42415.9 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.531

Length

378 amino acids

Sequence
(BLAST)

001: MALSTPLSQM SVALPIGIDG SSRSMIKVQS VSFTEKSCGP LLRLDTVSRK LSLKKRSKVC MSLQQQASRS KVSVTPLELE EPKETPLNLY RPKEPYTAKI
101: VSVERIVGPQ APGETCHIVI DHDGKVPYWE GQSYGVIPPG ENPKKPGAPH NVRLYSIAST RYGDSFDGKT ASLCVRRAQY YDPETGKEDP SKAGVCSNFL
201: CNAKPGDKVQ ITGPSGKVML LPEEDPKATH IMIATGTGVA PFRGYLRRMF MEDVPTFKFD GLAWLFLGVA NSDSLLYDEE FSSYLKDYPE NFRYDKALSR
301: EEKNKKGGKM YVQDKIEEYS DEIFKLLDNG AHIYFCGLKG MMPGIQDTLK RVAEERGESW EQKLTQLRKN KQWHVEVY

Best Arabidopsis Sequence Match ( AT4G05390.1 )
(BLAST)

001: MALSTTPSQM SVALPTRIDG SSRSMIKVQS ISFTDKSWGP PLLRLDSKSR SLGVKKRSTI CMSLQQSSKS KVLVTPLELE DPKETPLNLF RPKEPYTATI
101: VSVERIVGPQ APGETCHIVI DHDGNVPYWE GQSYGVIPPG ENPKKPGAPH NVRLYSIAST RYGDSFDGKT ASLCVRRAIY YDPETGKEDP SKAGVCSNFL
201: CNAKPGDKVK ITGPSGKVML LPEDDPKATH IMIATGTGVA PYRGYLRRMF MENVPNFKFD GLAWLFLGVA NSDSLLYDEE FAGYRKDYPE NFRYDKALSR
301: EEKNKKGGKM YVQDKIEEYS DEIFKLLDNG AHIYFCGLKG MMPGIQDTLK RVAEERGESW EQKLTQLRKN KQWHVEVY

Arabidopsis Description

RFNR1Ferredoxin--NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.