Factsheet for VIT_10s0003g04880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11782	Soybean	nucleus, plastid	84.62	84.62
KRH36793	Soybean	plastid	82.76	82.76
PGSC0003DMT400030830	Potato	extracellular, plastid	79.58	80.21
PGSC0003DMT400010484	Potato	plastid	79.31	79.95
Solyc02g024050.2.1	Tomato	extracellular	78.51	79.14
Os07t0147900-01	Rice	plastid	79.05	78.84
EER90782	Sorghum	plastid	78.78	78.16
Os03t0784700-01	Rice	plastid	77.98	77.78
AT1G30510.2	Thale cress	plastid	78.78	77.75
OQU88435	Sorghum	plastid	78.51	77.69
CDY09570	Canola	plastid	78.51	77.49
GSMUA_Achr4P28350_001	Banana	plastid	76.66	77.48
GSMUA_Achr4P31670_001	Banana	plastid	77.45	76.64
CDY46362	Canola	plastid	76.39	76.19
CDY02299	Canola	plastid	77.19	76.18
TraesCS5D01G431300.1	Wheat	plastid	75.86	76.06
AT4G05390.1	Thale cress	plastid	76.13	75.93
Bra029574.1-P	Field mustard	plastid	76.13	75.93
TraesCS2A01G252800.1	Wheat	plastid	75.86	75.86
CDY39167	Canola	plastid	75.86	75.66
TraesCS2D01G253400.1	Wheat	golgi	75.86	75.66
Zm00001d034345_P001	Maize	plastid	78.25	75.26
TraesCS5B01G424900.1	Wheat	plastid	74.27	75.07
TraesCS5A01G423000.1	Wheat	plastid	74.8	75.0
HORVU5Hr1G103180.1	Barley	plastid	73.21	71.5
Zm00001d018794_P003	Maize	plastid	76.13	71.04
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	77.19	69.62
HORVU2Hr1G038830.1	Barley	plastid	75.6	66.28
CDY51794	Canola	plastid	41.91	65.29
TraesCS2B01G272500.1	Wheat	plastid	36.6	62.73
VIT_04s0023g03510.t01	Wine grape	plastid	43.24	45.03
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	42.97	44.63
CDY20886	Canola	mitochondrion, plastid	24.14	42.13
CDY40011	Canola	cytosol, mitochondrion, peroxisome	25.99	41.7

Protein Annotations

KEGG:00195+1.18.1.2	EntrezGene:100242418	wikigene:100242418	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17
ProteinID:CBI31015	ProteinID:CBI31015.3	ncoils:Coil	UniProt:D7TKJ3	EMBL:FN595992	InterPro:FNR
InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100242418
wikigene:LOC100242418	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371
PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
TIGR:TC58796	UniParc:UPI0001BE3634	ArrayExpress:VIT_10s0003g04880	EnsemblPlantsGene:VIT_10s0003g04880	EnsemblPlants:VIT_10s0003g04880.t01	RefSeq:XP_002263658
RefSeq:XP_002263658.2	:	:	:	:	:

Description

Ferredoxin--NADP reductase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7TKJ3]

Coordinates

chr10:+:8748809..8753600

Molecular Weight (calculated)

42344.9 Da

IEP (calculated)

8.971

GRAVY (calculated)

-0.428

Length

377 amino acids

Sequence
(BLAST)

001: MAHLAVSQVS VTVPVGGESS LRRSVFQRHI ISFHEKSWAP ILALDLKTKN VRLKNRYVVC MSVQQASIPK VAVSPLELED AKGPPLNLYK PKEPYTATIV
101: SVERIVGPKA PGETCHIVID HGGIVPYWEG QSYGVIPPGE NPKKPGAPHN VRLYSIASTR YGDFFDGKTT TLCVRRAVYY DPVTGKEDPS KNGVCSNYLC
201: DSKPGDKIKI TGPSGKIMLL PEDDPNATHI MIATGTGVAP YRGYLRRMFM EDVPSFRFGG LAWLFLGVAN TDSLLYDNEF TKYLKDYPDQ FRYDKALSRE
301: QKNRNGGKMY VQDKIEEYSD EIFKLLDGGA HIYFCGLKGM MPGIQETLKR VADQRGENWE EKLAQLKKNK QWHVEVY

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.