Factsheet for VIT_04s0023g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	VIT_02s0025g04710.t01	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28804	Soybean	plastid	91.99	91.99
KRH69775	Soybean	plastid	88.67	88.67
KRH08061	Soybean	nucleus, plastid	88.12	88.12
PGSC0003DMT400009192	Potato	extracellular	87.57	87.57
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	85.08	84.85
Solyc02g062130.2.1	Tomato	plastid	83.98	83.98
AT5G66190.1	Thale cress	plastid	83.15	83.61
GSMUA_Achr11P...	Banana	plastid	82.6	83.52
GSMUA_Achr1P02830_001	Banana	plastid	82.32	82.78
CDY18592	Canola	plastid	81.77	81.77
Bra037182.1-P	Field mustard	plastid	81.77	81.54
CDX81408	Canola	plastid	81.77	81.54
Solyc02g083810.2.1	Tomato	plastid	82.6	80.81
Zm00001d045575_P001	Maize	plastid	75.69	77.18
Os06t0107700-01	Rice	plastid	76.8	76.8
EES04249	Sorghum	plastid	77.35	76.09
TraesCS6B01G015000.1	Wheat	plastid	76.24	76.03
TraesCS6D01G012200.1	Wheat	plastid, unclear	75.69	75.9
EER89050	Sorghum	plastid	75.41	75.62
TraesCS7D01G016800.1	Wheat	plastid	75.14	75.14
TraesCS6A01G009200.1	Wheat	plastid	75.14	74.93
TraesCS4A01G472500.1	Wheat	plastid	73.76	73.76
Zm00001d011833_P001	Maize	plastid	75.14	73.71
TraesCS7A01G020500.1	Wheat	plastid	73.48	73.68
Os02t0103800-01	Rice	plastid	72.93	72.13
HORVU7Hr1G002210.8	Barley	plastid	70.99	71.39
GSMUA_Achr8P13460_001	Banana	plastid	82.32	70.62
CDY55097	Canola	vacuole	70.44	67.28
HORVU6Hr1G000620.2	Barley	plastid	74.31	67.25
Zm00001d042049_P001	Maize	plastid	76.8	57.08
CDX83820	Canola	endoplasmic reticulum, plasma membrane	21.82	45.66
VIT_10s0003g04880.t01	Wine grape	plastid	45.03	43.24
CDY57760	Canola	plastid	81.22	29.28

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	EntrezGene:100241976	wikigene:100241976	Gene3D:2.40.30.10	Gene3D:3.40.50.80
EMBL:AM458370	ProteinID:CAN59785	ProteinID:CAN59785.1	ProteinID:CBI17370	ProteinID:CBI17370.3	UniProt:D7SNZ1
EMBL:FN594959	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004324	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008266	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605	GO:GO:0009607
GO:GO:0009767	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491
GO:GO:0019904	GO:GO:0031977	GO:GO:0042742	GO:GO:0045156	GO:GO:0045157	GO:GO:0048046
GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100241976	wikigene:LOC100241976	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TIGR:TC56830	TIGR:TC57250	UniParc:UPI00015CB33A
ArrayExpress:VIT_04s0023g03510	EnsemblPlantsGene:VIT_04s0023g03510	EnsemblPlants:VIT_04s0023g03510.t01	unigene:Vvi.6825	RefSeq:XP_002265774	RefSeq:XP_002265774.1
RefSeq:XP_002266073	RefSeq:XP_002266073.1	SEG:seg	:	:	:

Description

Ferredoxin--NADP reductase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7SNZ1]

Coordinates

chr4:+:20077191..20079804

Molecular Weight (calculated)

40536.0 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.323

Length

362 amino acids

Sequence
(BLAST)

001: MATAVTAAVS LPSSKTTSLS ARTSIISPER ISLKKVPLFY RDISAGGRVV SIRAQVTTEA PAKVEKISKK NEEGVIVNKF KPKNPYIGRC LLNTKITGDD
101: APGETWHMVF STEGEVPYRE GQSIGVIADG VDKNGKPHKL RLYSIASSAL GDFGDSKTVS LCVKRLVYTN ENGELVKGVC SNFLCDLKPG AEVKITGPVG
201: KEMLMPKDPN ATIIMLATGT GIAPFRSFLW KMFFEKHEDY KFNGLAWLFL GVPTSSSLLY KEEFEKMKEK KPENFRLDFA VSREQSNAKG EKMYIQTRMA
301: EYAEELWELL KKDNTYVYMC GLKGMEKGID DIMVSLAARD GIDWIEYKRQ LKRAEQWNVE VY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.