Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G319000.1 | |
| TraesCS5B01G560400.1 | |
| TraesCS5D01G569800.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G472500.1 | Wheat | plastid | 92.52 | 92.27 |
| TraesCS7D01G016800.1 | Wheat | plastid | 91.69 | 91.44 |
| HORVU7Hr1G002210.8 | Barley | plastid | 83.66 | 83.89 |
| Os06t0107700-01 | Rice | plastid | 78.95 | 78.73 |
| EER89050 | Sorghum | plastid | 75.9 | 75.9 |
| Zm00001d045575_P001 | Maize | plastid | 73.96 | 75.21 |
| VIT_18s0001g14450.t01 | Wine grape | cytosol, plastid | 75.07 | 74.66 |
| GSMUA_Achr11P... | Banana | plastid | 73.68 | 74.3 |
| KRH28804 | Soybean | plastid | 73.96 | 73.76 |
| VIT_04s0023g03510.t01 | Wine grape | plastid | 73.68 | 73.48 |
| KRH08061 | Soybean | nucleus, plastid | 73.68 | 73.48 |
| AT5G66190.1 | Thale cress | plastid | 72.85 | 73.06 |
| Solyc02g062130.2.1 | Tomato | plastid | 73.13 | 72.93 |
| PGSC0003DMT400009192 | Potato | extracellular | 73.13 | 72.93 |
| Bra016481.1-P | Field mustard | plastid | 73.41 | 72.8 |
| KRH69775 | Soybean | plastid | 72.85 | 72.65 |
| TraesCS6A01G009200.1 | Wheat | plastid | 72.85 | 72.45 |
| Bra012203.1-P | Field mustard | plastid | 73.41 | 72.21 |
| CDY18592 | Canola | plastid | 72.3 | 72.1 |
| CDY57601 | Canola | plastid | 73.13 | 71.93 |
| GSMUA_Achr1P02830_001 | Banana | plastid | 71.47 | 71.67 |
| Bra037182.1-P | Field mustard | plastid | 72.02 | 71.63 |
| CDX81408 | Canola | plastid | 72.02 | 71.63 |
| AT1G20020.1 | Thale cress | plastid | 72.85 | 71.27 |
| CDX83730 | Canola | plastid | 73.68 | 70.56 |
| CDY62940 | Canola | plastid | 72.3 | 70.35 |
| CDY43420 | Canola | plastid | 70.91 | 70.33 |
| Solyc02g083810.2.1 | Tomato | plastid | 68.42 | 66.76 |
| GSMUA_Achr8P13460_001 | Banana | plastid | 74.24 | 63.51 |
| CDY55097 | Canola | vacuole | 63.43 | 60.42 |
| CDX83820 | Canola | endoplasmic reticulum, plasma membrane | 20.78 | 43.35 |
| TraesCS2A01G252800.1 | Wheat | plastid | 42.38 | 40.58 |
| TraesCS5A01G423000.1 | Wheat | plastid | 40.44 | 38.83 |
| CDY57760 | Canola | plastid | 71.75 | 25.8 |
Protein Annotations
| KEGG:00195+1.18.1.2 | MapMan:1.1.5.2.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.80 | InterPro:FNR | InterPro:FNR_plant_Cyanobacteria |
| InterPro:Fd_Rdtase_FAD-bd | InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:IPR017927 | InterPro:OxRdtase_FAD/NAD-bd | PFAM:PF00175 | PIRSF:PIRSF000361 |
| PIRSF:PIRSF501178 | PRINTS:PR00371 | PFscan:PS51384 | PANTHER:PTHR43314 | PANTHER:PTHR43314:SF3 | InterPro:Riboflavin_synthase-like_b-brl |
| SUPFAM:SSF52343 | SUPFAM:SSF63380 | EnsemblPlantsGene:TraesCS7A01G020500 | EnsemblPlants:TraesCS7A01G020500.1 | TIGR:cd06208 | SEG:seg |
Description
No Description!
Coordinates
chr7A:-:8373897..8376392
Molecular Weight (calculated)
39844.8 Da
IEP (calculated)
8.427
GRAVY (calculated)
-0.324
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVTAAAVS LRAATTTSTS PSSAPQHSHC SFPCAARTTA VSRRGVLTVR AQAVSTDAAP VKEKKVSKKQ EEGVVTNKFR PKEPYVGKCL LNTKITADDA
101: PGETWHMVFS TDGEVPYKEG QSIGVVADGQ DKNGKPHKLR LYSIASSALG DFGDAKTVSL CVKRLVYTND AGEVVKGVCS NFLCDLKPGA DVNITGPVGK
201: EMLMPKDPNA TIIMLATGTG IAPFRSFLWK MFFEKYEDYK FNGLAWLFLG VPTSSSLLYP EEFGKMKAKA PDNFRVDYAI SREETNAAGE KMYIQTRMAE
301: YKDELWELLK KDNTYVYMCG LKGMEKGIDE IMIPLASKEG IDWIDYRKQL KKSEQWNVEV Y
101: PGETWHMVFS TDGEVPYKEG QSIGVVADGQ DKNGKPHKLR LYSIASSALG DFGDAKTVSL CVKRLVYTND AGEVVKGVCS NFLCDLKPGA DVNITGPVGK
201: EMLMPKDPNA TIIMLATGTG IAPFRSFLWK MFFEKYEDYK FNGLAWLFLG VPTSSSLLYP EEFGKMKAKA PDNFRVDYAI SREETNAAGE KMYIQTRMAE
301: YKDELWELLK KDNTYVYMCG LKGMEKGIDE IMIPLASKEG IDWIDYRKQL KKSEQWNVEV Y
001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY
Arabidopsis Description
LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.